24 February 2017 Robust nuclei segmentation in cyto-histopathological images using statistical level set approach with topology preserving constraint
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Abstract
Computerized assessments for diagnosis or malignancy grading of cyto-histopathological specimens have drawn increased attention in the field of digital pathology. Automatic segmentation of cell nuclei is a fundamental step in such automated systems. Despite considerable research, nuclei segmentation is still a challenging task due noise, nonuniform illumination, and most importantly, in 2D projection images, overlapping and touching nuclei. In most published approaches, nuclei refinement is a post-processing step after segmentation, which usually refers to the task of detaching the aggregated nuclei or merging the over-segmented nuclei. In this work, we present a novel segmentation technique which effectively addresses the problem of individually segmenting touching or overlapping cell nuclei during the segmentation process. The proposed framework is a region-based segmentation method, which consists of three major modules: i) the image is passed through a color deconvolution step to extract the desired stains; ii) then the generalized fast radial symmetry transform is applied to the image followed by non-maxima suppression to specify the initial seed points for nuclei, and their corresponding GFRS ellipses which are interpreted as the initial nuclei borders for segmentation; iii) finally, these nuclei border initial curves are evolved through the use of a statistical level-set approach along with topology preserving criteria for segmentation and separation of nuclei at the same time. The proposed method is evaluated using Hematoxylin and Eosin, and fluorescent stained images, performing qualitative and quantitative analysis, showing that the method outperforms thresholding and watershed segmentation approaches.
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Shaghayegh Taheri, Shaghayegh Taheri, Thomas Fevens, Thomas Fevens, Tien D. Bui, Tien D. Bui, } "Robust nuclei segmentation in cyto-histopathological images using statistical level set approach with topology preserving constraint", Proc. SPIE 10133, Medical Imaging 2017: Image Processing, 1013318 (24 February 2017); doi: 10.1117/12.2254658; https://doi.org/10.1117/12.2254658
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