23 February 2005 Comparison of two approaches to oligo sets optimization
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Abstract
DNA computing provides new molecular mechanism for storing and processing information. DNA macrostructures are bases of specially designed algorithms realized by so called soft hardware applications. To obtain these structures a special DNA sequences design tool is required. In this paper comparison of two such computer programs was provided. In our program a custom genetic algorithm with new hybrid operators was involved in creating a set of DNA chains. The second program written by Winfree makes random changes using a given set of short constant forbidden fragments.
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Grzegorz Tomczuk, Piotr Wasiewicz, "Comparison of two approaches to oligo sets optimization", Proc. SPIE 5775, Photonics Applications in Astronomy, Communications, Industry, and High-Energy Physics Experiments III, (23 February 2005); doi: 10.1117/12.610790; https://doi.org/10.1117/12.610790
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KEYWORDS
Genetic algorithms

Molecular electronics

Genetics

Computer architecture

Computer programming

Computing systems

Data processing

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