We report a fiber based approach to broadly tunable femtosecond mid-IR source based on difference frequency mixing of the outputs from dual photonic crystal fibers (PCF) pumped by a femtosecond fiber laser, which is a custom-built Yb-doped fiber chirped pulse amplifier (CPA) delivering 1.35 W, 300 fs, 40 MHz pulses centered at 1035 nm. The CPA output is split into two arms to pump two different types of PCFs for generation of the spectrally separated pulses. The shorter wavelength pulses are generated in one PCF with its single zero dispersion wavelength (ZDW) at 1040 nm. Low normal dispersion around the pumping wavelength enables spectral broadening dominated by self-phase modulation (SPM), which extends from 970 to 1092 nm with up to 340 mW of average power. The longer wavelength pulses are generated in a second PCF which has two closely spaced ZDWs around the laser wavelength. Facilitated by its special dispersion profile, the laser wavelength is converted to the normal dispersion region of the fiber, leading to the generation of the narrow-band intense Stokes pulses with 1 to 1.25 nJ of pulse energy at a conversion efficiency of ~30% from the laser pulses. By difference mixing the outputs from both PCFs in a type-II AgGaS2 crystal, mid-IR pulses tunable from 4.2 to 9 μm are readily generated with its average power ranging from 135 – 640 μW, corresponding to 3 – 16 pJ of pulse energy which is comparable to the reported fiber based mid-IR sources enabled by the solitons self-frequency shift (for example, 3 – 10 μm with 10 pJ of maximum pulse energy in ). The reported approach provides a power-scalable route to the generation of broadly tunable femtosecond mid-IR pulses, which we believe to be a promising solution for developing compact, economic and high performance mid-IR sources.