25 November 2014 The discrepancies in the results of bioinformatics tools for genomic structural annotation
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Proceedings Volume 9290, Photonics Applications in Astronomy, Communications, Industry, and High-Energy Physics Experiments 2014; 92901L (2014) https://doi.org/10.1117/12.2074396
Event: Symposium on Photonics Applications in Astronomy, Communications, Industry and High-Energy Physics Experiments, 2014, Warsaw, Poland
Abstract
A major focus of sequencing project is to identify genes in genomes. However it is necessary to define the variety of genes and the criteria for identifying them. In this work we present discrepancies and dependencies from the application of different bioinformatic programs for structural annotation performed on the cucumber data set from Polish Consortium of Cucumber Genome Sequencing. We use Fgenesh, GenScan and GeneMark to automated structural annotation, the results have been compared to reference annotation.
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Magdalena Pawełkowicz, Robert Nowak, Paweł Osipowski, Jacek Rymuszka, Katarzyna Świerkula, Michał Wojcieszek, Zbigniew Przybecki, "The discrepancies in the results of bioinformatics tools for genomic structural annotation", Proc. SPIE 9290, Photonics Applications in Astronomy, Communications, Industry, and High-Energy Physics Experiments 2014, 92901L (25 November 2014); doi: 10.1117/12.2074396; https://doi.org/10.1117/12.2074396
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