24 March 2016 Glioma grading using cell nuclei morphologic features in digital pathology images
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Abstract
This work proposes a computationally efficient cell nuclei morphologic feature analysis technique to characterize the brain gliomas in tissue slide images. In this work, our contributions are two-fold: 1) obtain an optimized cell nuclei segmentation method based on the pros and cons of the existing techniques in literature, 2) extract representative features by k-mean clustering of nuclei morphologic features to include area, perimeter, eccentricity, and major axis length. This clustering based representative feature extraction avoids shortcomings of extensive tile [1] [2] and nuclear score [3] based methods for brain glioma grading in pathology images. Multilayer perceptron (MLP) is used to classify extracted features into two tumor types: glioblastoma multiforme (GBM) and low grade glioma (LGG). Quantitative scores such as precision, recall, and accuracy are obtained using 66 clinical patients’ images from The Cancer Genome Atlas (TCGA) [4] dataset. On an average ~94% accuracy from 10 fold crossvalidation confirms the efficacy of the proposed method.
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Syed M. S. Reza, Khan M. Iftekharuddin, "Glioma grading using cell nuclei morphologic features in digital pathology images", Proc. SPIE 9785, Medical Imaging 2016: Computer-Aided Diagnosis, 97852U (24 March 2016); doi: 10.1117/12.2217559; https://doi.org/10.1117/12.2217559
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