Optical fibers are routinely used to couple high-resolution spectrographs to modern telescopes, enabling important advantages in areas such as the search for extrasolar planets using spectroscopic radial velocity measurements of candidate stars. Optical fibers partially scramble the input illumination, and this feature enables a fiber feed to provide more uniform illumination to the spectrograph optics, thereby reducing systematic errors in radial velocity measurements. However fibers suffer from focal ratio degradation (FRD), a spreading of the beam at the output of the fiber with respect to that at the fiber input, which results in losses in throughput and resolution. Modal noise, a measurement uncertainty caused by inherent fiber properties and evident as a varying spatial intensity at the fiber exit plane, reduces the signal to noise ratio in the data. Devices such as double scramblers are often used to improve scrambling, and better fiber end preparation can mitigate FRD. Many instruments agitate the fiber during an observation to reduce modal noise, and stretching the fiber during use has been shown to offer a greater reduction in that noise. But effects of agitation and stretching on fiber parameters such as total transmission and focal ratio degradation have not been adequately studied. In this paper we present measurements of transmission loss and focal ratio degradation for both agitated and stretched fibers.