Automated segmentation of cellular images using an effective region force

Khadeejah Mohiuddin; Justin W.L. Wan

doi:10.1117/1.JMI.5.4.044002

16 October 2018 Automated segmentation of cellular images using an effective region force

Khadeejah Mohiuddin, Justin W.L. Wan

Author Affiliations +

Journal of Medical Imaging, Vol. 5, Issue 4, 044002 (October 2018). https://doi.org/10.1117/1.JMI.5.4.044002

Abstract

Understanding the behavior of cells is an important problem for biologists. Significant research has been done to facilitate this by automating the segmentation of microscopic cellular images. Bright-field images of cells prove to be particularly difficult to segment, due to features such as low contrast, missing boundaries, and broken halos. We present two algorithms for automated segmentation of cellular images. These algorithms are based on a graph-partitioning approach, where each pixel is modeled as a node of a weighted graph. The method combines an effective region force with the Laplacian and total variation boundary forces, respectively, to give the two models. This region force can be interpreted as a conditional probability of a pixel belonging to a certain class (cell or background) given a small set of already labeled pixels. For practicality, we use a small set of only background pixels from the border of cell images as the labeled set. Both algorithms are tested on bright-field images to give good results. Due to faster performance, the Laplacian-based algorithm is also tested on a variety of other datasets, including fluorescent images, phase-contrast images, and 2-D and 3-D simulated images. The results show that the algorithm performs well and consistently across a range of various cell image features, such as the cell shape, size, contrast, and noise levels.

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Khadeejah Mohiuddin and Justin W.L. Wan "Automated segmentation of cellular images using an effective region force," Journal of Medical Imaging 5(4), 044002 (16 October 2018). https://doi.org/10.1117/1.JMI.5.4.044002

Received: 30 March 2018; Accepted: 19 September 2018; Published: 16 October 2018

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