journal of biomedical optics
VOL. 13 · NO. 3 | May 2008
CONTENTS
JBO Letters
Caitlin O'Connell-Rodwell, Mark Mackanos, Dmitrii Simanovski, Yu-An Cao, Michael Bachmann, H. Alan Schwettman, Christopher Contag
J. Biomed. Opt. 13(3), 030501 (1 May 2008) doi:10.1117/1.2904665
TOPICS: Tissues, In vivo imaging, Proteins, Gas lasers, Pulsed laser operation, Injuries, Skin, Bioluminescence, Carbon monoxide, Laser applications
Mohammed Rahman, Pankaj Chaturvedi, Anne Gillenwater, Rebecca Richards-Kortum
J. Biomed. Opt. 13(3), 030502 (1 May 2008) doi:10.1117/1.2907455
TOPICS: Cancer, Luminescence, Imaging systems, Tissues, Reflectivity, Headlamps, Light emitting diodes, Cameras, Visualization, Surgery
Hoi-Ying Holman, Kathy Bjornstad, Michael Martin, Wayne McKinney, Eleanor Blakely, Francis Blankenberg
J. Biomed. Opt. 13(3), 030503 (1 May 2008) doi:10.1117/1.2937469
TOPICS: Mid-IR, Absorption, Reflectivity, FT-IR spectroscopy, Foam, Infrared radiation, Virtual point source, Tissues, Refractive index, Reflectance spectroscopy
Ang Li, Jing Liu, Vaya Tanamai, Richard Kwong, Albert Cerussi, Bruce Tromberg
J. Biomed. Opt. 13(3), 030504 (1 May 2008) doi:10.1117/1.2937471
TOPICS: Tumors, Line scan image sensors, Optical properties, Breast, Tissue optics, Finite element methods, Ultrasonography, Absorption, Diffuse optical spectroscopy, Reflectivity
Christine Fleming, Crystal Ripplinger, Bryan Webb, Igor Efimov, Andrew Rollins
J. Biomed. Opt. 13(3), 030505 (1 May 2008) doi:10.1117/1.2937470
TOPICS: Optical coherence tomography, 3D image processing, Heart, Algorithm development, Structured optical fibers, Image filtering, Tissues, Image processing, Solids, Image analysis
J. Biomed. Opt. 13(3), 030506 (1 May 2008) doi:10.1117/1.2938700
TOPICS: Digital signal processing, Optical coherence tomography, Endoscopes, Signal processing, Microelectromechanical systems, 3D image processing, Image processing, Coherence imaging, 3D acquisition, Signal detection
Tammy Lee, Elma Baron, Thomas Foster
J. Biomed. Opt. 13(3), 030507 (1 May 2008) doi:10.1117/1.2939068
TOPICS: Luminescence, Photodynamic therapy, Reflectivity, Spectroscopy, Clinical trials, Absorption, Lymphoma, Fluorescence spectroscopy, Tissue optics, Control systems
Special Section on Visible Fluorescent Proteins
Richard Day, Fred Schaufele
J. Biomed. Opt. 13(3), 031202 (1 May 2008) doi:10.1117/1.2939093
TOPICS: Proteins, Fluorescent proteins, Fluorescence resonance energy transfer, Green fluorescent protein, Luminescence, Cell biology, Ocean optics, Organisms, Microscopy, Physiology
Richard Day, Cynthia Booker, Ammasi Periasamy
J. Biomed. Opt. 13(3), 031203 (1 May 2008) doi:10.1117/1.2939094
TOPICS: Fluorescence resonance energy transfer, Proteins, Venus, Luminescence, Fluorescent proteins, Microscopy, Resonance energy transfer, Sensors, Microscopes, Quantum efficiency
Srinagesh Koushik, Steven Vogel
J. Biomed. Opt. 13(3), 031204 (1 May 2008) doi:10.1117/1.2940367
TOPICS: Luminescence, Venus, Fluorescence resonance energy transfer, Proteins, Fluorescence anisotropy, Anisotropy, Refractive index, Resonance energy transfer, Photons, Fluorescence lifetime imaging
Birgit Hoffmann, Thomas Zimmer, Nikolaj Klöcker, Laimonas Kelbauskas, Karsten Koenig, Klaus Benndorf, Christoph Biskup
J. Biomed. Opt. 13(3), 031205 (1 May 2008) doi:10.1117/1.2937829
TOPICS: Luminescence, Proteins, Fluorescence resonance energy transfer, Fluorescent proteins, Streak cameras, Capillaries, Green fluorescent protein, Confocal microscopy, Molecules, Microscopes
Hewang Li, Hui-Fang Li, Robin Felder, Ammasi Periasamy, Pedro Jose
J. Biomed. Opt. 13(3), 031206 (1 May 2008) doi:10.1117/1.2943286
TOPICS: Fluorescence resonance energy transfer, Plasma, Receptors, Proteins, Microscopy, Luminescence, Lithium, Image processing, Control systems, Confocal microscopy
Eric Kofoed, Martin Guerbadot, Fred Schaufele
J. Biomed. Opt. 13(3), 031207 (1 May 2008) doi:10.1117/1.2940366
TOPICS: Fluorescence resonance energy transfer, Calibration, Luminescence, Proteins, Energy transfer, Fluorescent proteins, Receptors, Resonance energy transfer, Molecules, Data modeling
Marina Mikhailova, Jonathan Blansett, Sandi Jacobi, Philip Mayeux, Lawrence Cornett
J. Biomed. Opt. 13(3), 031208 (1 May 2008) doi:10.1117/1.2943285
TOPICS: Receptors, Fluorescence resonance energy transfer, Proteins, Autoregressive models, Calcium, Confocal microscopy, Interfaces, Image fusion, Luminescence, Fluorescent proteins
J. Biomed. Opt. 13(3), 031209 (1 May 2008) doi:10.1117/1.2937830
TOPICS: Fluorescence resonance energy transfer, Luminescence, Cell death, Multichannel imaging systems, Imaging systems, Green fluorescent protein, Proteins, Fluorescent proteins, Image fusion, Optoelectronics
Nicole McGrath, Margarida Barroso
J. Biomed. Opt. 13(3), 031210 (1 May 2008) doi:10.1117/1.2939417
TOPICS: Fluorescence resonance energy transfer, Molecules, Image processing, Quantum dots, Confocal microscopy, Energy transfer, Luminescence, Image filtering, Imaging spectroscopy, Contamination
Kelly Rogers, Jean-Rene Martin, Olivier Renaud, Eric Karplus, Marie-Anne Nicola, Marie Nguyen, Sandrine Picaud, Spencer Shorte, Philippe Brulet
J. Biomed. Opt. 13(3), 031211 (1 May 2008) doi:10.1117/1.2937236
TOPICS: Calcium, Bioluminescence, Electron multiplying charge coupled devices, Sensors, Green fluorescent protein, Microscopes, Signal detection, Luminescence, Acquisition tracking and pointing, Video
Guillaume Lessard, Satoshi Habuchi, James Werner, Peter Goodwin, Frans De Schryver, Johan Hofkens, Mircea Cotlet
J. Biomed. Opt. 13(3), 031212 (1 May 2008) doi:10.1117/1.2937477
TOPICS: Chromophores, Luminescence, Green fluorescent protein, Fluorescence resonance energy transfer, Proteins, Fluorescence correlation spectroscopy, Fluorescent proteins, Fluorescence spectroscopy, Molecules, Diffusion
Wataru Watanabe, Sachhiro Matsunaga, Tsunehito Higashi, Kiichi Fukui, Kazuyoshi Itoh
J. Biomed. Opt. 13(3), 031213 (1 May 2008) doi:10.1117/1.2939401
TOPICS: Luminescence, Femtosecond phenomena, Laser ablation, In vivo imaging, Confocal microscopy, Green fluorescent protein, Oscillators, Molecules, Microscopes, Fluorescent proteins
J. Biomed. Opt. 13(3), 031214 (1 May 2008) doi:10.1117/1.2940576
TOPICS: Scanning laser ophthalmoscopy, Proteins, Diffusion, Fluorescence correlation spectroscopy, Molecules, Fluorescent proteins, Luminescence, Molecular interactions, Imaging spectroscopy, In vitro testing
Gabriele Malengo, Annapaola Andolfo, Nicolai Sidenius, Enrico Gratton, Moreno Zamai, Valeria Caiolfa
J. Biomed. Opt. 13(3), 031215 (1 May 2008) doi:10.1117/1.2940570
TOPICS: Proteins, Diffusion, Fluorescence correlation spectroscopy, Receptors, Photon counting, Luminescence, Molecules, Biological research, Molecular spectroscopy, Statistical analysis
Laurent Cognet, Catherine Tardin, Marie-Laure Negrier, Christelle Breillat, Francoise Coussen, Daniel Choquet, Brahim Lounis
J. Biomed. Opt. 13(3), 031216 (1 May 2008) doi:10.1117/1.2940600
TOPICS: Proteins, Molecules, Green fluorescent protein, Molecular aggregates, Monte Carlo methods, Fluorescent proteins, Photons, Luminescence, Microscopy, Computer simulations
J. Biomed. Opt. 13(3), 031217 (1 May 2008) doi:10.1117/1.2942373
TOPICS: Gold, Luminescence, Fluorescence lifetime imaging, Multiphoton microscopy, Particles, Nanoparticles, Biomedical optics, Cancer, Optical properties, Imaging systems
J. Biomed. Opt. 13(3), 031218 (1 May 2008) doi:10.1117/1.2937212
TOPICS: Luminescence, Refractive index, Green fluorescent protein, Proteins, Fluorescence lifetime imaging, Interfaces, Confocal microscopy, Glasses, Prisms, Molecules
J. Biomed. Opt. 13(3), 031219 (1 May 2008) doi:10.1117/1.2928154
TOPICS: Cancer, Glucose, Mode conditioning cables, Luminescence, In vivo imaging, Fluorescent proteins, Tumors, Imaging systems, Data acquisition, Nonlinear optics
Paolo Provenzano, Curtis Rueden, Steven Trier, Long Yan, Suzanne Ponik, David Inman, Patricia Keely, Kevin Eliceiri
J. Biomed. Opt. 13(3), 031220 (1 May 2008) doi:10.1117/1.2940365
TOPICS: Collagen, Tumors, Second-harmonic generation, Fluorescence lifetime imaging, Visualization, Optical imaging, Luminescence, 3D image processing, Cancer, Imaging systems
Review Papers
Yasuyuki Kakihana, Akira Matsunaga, Tomotsugu Yasuda, Toru Imabayashi, Yuichi Kanmura, Mamoru Tamura
J. Biomed. Opt. 13(3), 033001 (1 May 2008) doi:10.1117/1.2940583
TOPICS: Near infrared spectroscopy, Brain, Arteries, Oxygen, Surgery, Traumatic brain injury, Blood, Hypoxia, Blood circulation, Tissues
Research Papers
Matthew Brenner, Kelly Kreuter, Johnny Ju, Sari Mahon, Lillian Tseng, David Mukai, Tanya Burney, Shuguang Guo, Jiangping Su, Andrew Tran, Andriy Batchinsky, Leopoldo Cancio, Navneet Narula, Zhongping Chen
J. Biomed. Opt. 13(3), 034001 (1 May 2008) doi:10.1117/1.2939400
TOPICS: Optical coherence tomography, Injuries, In vivo imaging, Fiber optics, Blood, Statistical analysis, GRIN lenses, Image resolution, Veins, Instrument modeling
J. Biomed. Opt. 13(3), 034002 (1 May 2008) doi:10.1117/1.2931079
TOPICS: Optical coherence tomography, Fourier transforms, Principal component analysis, Tissues, Image classification, Binary data, Biomedical optics, Data modeling, Coherence (optics), Detection and tracking algorithms
Chenyang Xu, Joseph Schmitt, Stephane Carlier, Renu Virmani
J. Biomed. Opt. 13(3), 034003 (1 May 2008) doi:10.1117/1.2927464
TOPICS: Optical coherence tomography, Signal attenuation, Backscatter, Tissues, Arteries, Tissue optics, Imaging systems, Optical properties, Natural surfaces, Optical fibers
A. Brazhe, N. Brazhe, G. Maksimov, P. Ignatyev, A. Rubin, E. Mosekilde, Olga Sosnovtseva
J. Biomed. Opt. 13(3), 034004 (1 May 2008) doi:10.1117/1.2937213
TOPICS: Neurons, Microscopy, Wavelets, Calcium, Mirrors, Objectives, Visualization, Refractive index, Plasma, Microscopes
William Warger, Judith Newmark, Carol Warner, Charles DiMarzio
J. Biomed. Opt. 13(3), 034005 (1 May 2008) doi:10.1117/1.2937468
TOPICS: Digital image correlation, Microscopy, Imaging systems, Luminescence, Refraction, Biomedical optics, Confocal microscopy, Sensing systems, In vitro testing, Optical microscopy
Guoliang Huang, Cheng Deng, Jiang Zhu, Shukuan Xu, Chao Han, Xiaobo Song, Xiaoyong Yang
J. Biomed. Opt. 13(3), 034006 (1 May 2008) doi:10.1117/1.2939402
TOPICS: Imaging systems, Digital imaging, Scanners, Objectives, Optical scanning systems, Biomedical optics, Image processing, Signal detection, Proteins, Spectral resolution
Georgina To'a Salazar, Yuli Wang, Christopher Sims, Mark Bachman, Guann-pyng Li, Nancy Allbritton
J. Biomed. Opt. 13(3), 034007 (1 May 2008) doi:10.1117/1.2937475
TOPICS: Pulsed laser operation, Laser energy, Glasses, Laser damage threshold, Plasma, Laser applications, Laser marking, Laser cutting, Interfaces, Laser scattering
Cheng Zhong, Eric Tkaczyk, Thommey Thomas, Jing Ye, Andrzej Myc, Anna Bielinska, Zhengyi Cao, Istvan Majoros, Balazs Keszler, James Baker, Theodore Norris
J. Biomed. Opt. 13(3), 034008 (1 May 2008) doi:10.1117/1.2931077
TOPICS: Luminescence, Flow cytometry, In vivo imaging, In vitro testing, Blood, Blood vessels, Particles, Femtosecond phenomena, Ear, Capillaries
Brian Pogue, Chao Sheng, Juan Manuel Benavides, David Forcione, Bill Puricelli, Norman Nishioka, Tayyaba Hasan
J. Biomed. Opt. 13(3), 034009 (1 May 2008) doi:10.1117/1.2937476
TOPICS: Luminescence, Photodynamic therapy, Esophagus, Tissue optics, Signal detection, Tissues, Liquids, In vivo imaging, Calibration, Oxygen
Seonkyung Lee, Leyun Zhu, Ahmed Minhaj, Michael Hinds, Danthu Vu, David Rosen, Steven Davis, Tayyaba Hasan
J. Biomed. Opt. 13(3), 034010 (1 May 2008) doi:10.1117/1.2927465
TOPICS: Oxygen, Semiconductor lasers, Photodynamic therapy, Picosecond phenomena, Pulsed laser operation, Tumors, Diodes, Molecular lasers, Data acquisition, Luminescence
J. Biomed. Opt. 13(3), 034011 (1 May 2008) doi:10.1117/1.2937478
TOPICS: Ultrasonography, Cavitation, Transducers, Windows, Acoustic emission, Laser tissue interaction, Acoustics, Pulsed laser operation, Wave propagation, Signal detection
Thomas Fritsch, Maarten van Herpen, Golo von Basum, Peter Hering, Manfred Mürtz
J. Biomed. Opt. 13(3), 034012 (1 May 2008) doi:10.1117/1.2937215
TOPICS: Carbon monoxide, Glucose, Hydrogen, Sensors, Laser spectroscopy, Blood, Spectroscopy, Absorption, Gas lasers, Nitrogen
Seng Teh, Wei Zheng, Khek Yu Ho, Ming Teh, Khay Guan Yeoh, Zhiwei Huang
J. Biomed. Opt. 13(3), 034013 (1 May 2008) doi:10.1117/1.2939406
TOPICS: Raman spectroscopy, Tissues, Cancer, Diagnostics, Data modeling, Tissue optics, Algorithm development, Tumor growth modeling, Near infrared, Pathology
Cemre Kortun, Yasser Hijazi, Dizem Arifler
J. Biomed. Opt. 13(3), 034014 (1 May 2008) doi:10.1117/1.2939405
TOPICS: Finite-difference time-domain method, Scattering, Tissues, Monte Carlo methods, Reflectivity, Sensors, Photodetectors, Photon transport, Refractive index, Computer simulations
Changfang Zhu, Gregory Palmer, Tara Breslin, Josephine Harter, Nirmala Ramanujam
J. Biomed. Opt. 13(3), 034015 (1 May 2008) doi:10.1117/1.2931078
TOPICS: Tissues, Luminescence, Breast, Scattering, Absorption, Diffuse reflectance spectroscopy, Breast cancer, Collagen, Tumor growth modeling, Monte Carlo methods
Paul Martinsen, Jean-Luc Charlier, Tim Wilcox, Guy Warman, Andrew McGlone, Rainer Kunnemeyer
J. Biomed. Opt. 13(3), 034016 (1 May 2008) doi:10.1117/1.2943191
TOPICS: Blood, Oxygen, Absorption, Absorbance, Temperature metrology, Plasma, Scattering, Optical testing, Transducers, Transmittance
J. Biomed. Opt. 13(3), 034017 (1 May 2008) doi:10.1117/1.2940587
TOPICS: Hemodynamics, Near infrared spectroscopy, Sensors, Brain, Signal detection, Head, Visualization, Interference (communication), Optical fibers, Monte Carlo methods
J. Biomed. Opt. 13(3), 034018 (1 May 2008) doi:10.1117/1.2937214
TOPICS: Luminescence, Cancer, Tongue, Fluorescence spectroscopy, Diagnostics, Tumor growth modeling, Tissues, Spectroscopy, Animal model studies, Tissue optics
J. Biomed. Opt. 13(3), 034019 (1 May 2008) doi:10.1117/1.2943156
TOPICS: Cornea, Collagen, Second-harmonic generation, Wound healing, Signal detection, Multiphoton microscopy, Surgery, Biological research, Medicine, Tissues
Jonathan Liu, Michael Mandella, James Crawford, Christopher Contag, Thomas Wang, Gordon Kino
J. Biomed. Opt. 13(3), 034020 (1 May 2008) doi:10.1117/1.2939428
TOPICS: Scattering, Mirrors, Light scattering, Confocal microscopy, Tissue optics, Monte Carlo methods, Tissues, Luminescence, Microscopes, Esophagus
Julian Borejdo, Priya Muthu, John Talent, Zygmunt Gryczynski, Nils Calander, Irina Akopova, Tanya Shtoyko, Ignacy Gryczynski
J. Biomed. Opt. 13(3), 034021 (1 May 2008) doi:10.1117/1.2938689
TOPICS: Molecules, Glasses, Luminescence, Nanoparticles, Cameras, Silver, Objectives, Photons, Proteins, Signal to noise ratio
Russell Connally, James Piper
J. Biomed. Opt. 13(3), 034022 (1 May 2008) doi:10.1117/1.2928169
TOPICS: Luminescence, Microscopes, Signal to noise ratio, Light emitting diodes, Cameras, Ultraviolet light emitting diodes, Sensors, Europium, Solid state electronics, Optical filters
J. Biomed. Opt. 13(3), 034023 (1 May 2008) doi:10.1117/1.2927466
TOPICS: Photoacoustic spectroscopy, Oxygen, Absorption, Pulsed laser operation, Luminescence, Signal detection, Receivers, Tissue optics, Molecules, Ultrasonography
J. Biomed. Opt. 13(3), 034024 (1 May 2008) doi:10.1117/1.2940362
TOPICS: Photoacoustic spectroscopy, Ultrasonography, Temperature metrology, Tissue optics, Photoacoustic imaging, Laser therapeutics, Thermography, Tumors, Nanoparticles, Tissues
J. Biomed. Opt. 13(3), 034025 (1 May 2008) doi:10.1117/1.2942374
TOPICS: Teeth, Minerals, Dental caries, Modulation, Luminescence, In vitro testing, Radiometry, Polishing, Signal attenuation, Thermography
Xuefeng Yao, P. Wang, R. Cai
J. Biomed. Opt. 13(3), 034026 (1 May 2008) doi:10.1117/1.2928126
TOPICS: Bone, Speckle, Head, Speckle pattern, Tissues, Digital image correlation, Digital recording, Biological research, Digital Light Processing, CCD cameras
J. Biomed. Opt. 13(3), 034027 (1 May 2008) doi:10.1117/1.2940360
TOPICS: Telescopes, Mirrors, Eye, Beam splitters, Objectives, Optical instrument design, Eyeglasses, Prototyping, Visualization, Off axis mirrors
Errata
Jian Lu, Francisco Pereira, Scott Fraser, Morteza Gharib
J. Biomed. Opt. 13(3), 039803 (1 May 2008) doi:10.1117/1.2953560
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