journal of biomedical optics
VOL. 13 · NO. 6 | November 2008
CONTENTS
IN THIS ISSUE

Errata (1)
JBO Letters
Mehmet Unlu, Yuting Lin, Ozlem Birgul, Orhan Nalcioglu, Gultekin Gulsen
J. Biomed. Opt. 13(6), 060501 (1 November 2008) https://doi.org/10.1117/1.3041165
TOPICS: Magnetic resonance imaging, Tumors, Absorption, Magnetism, Imaging systems, Image enhancement, In vivo imaging, Optical tomography, Preclinical imaging, Breast cancer
Henry Fu, Yuxin Leng, Michael Cobb, Kevin Hsu, Joo Ha Hwang, Xingde Li
J. Biomed. Opt. 13(6), 060502 (1 November 2008) https://doi.org/10.1117/1.3037340
TOPICS: Optical coherence tomography, Esophagus, GRIN lenses, Imaging systems, 3D image processing, In vivo imaging, Coherence imaging, Single mode fibers, Lens design, Metals
J. Biomed. Opt. 13(6), 060503 (1 November 2008) https://doi.org/10.1117/1.3037341
TOPICS: Polarization, Optical coherence tomography, Point spread functions, Light sources, Light, Tissues, Birefringence, Light scattering, Scattering, Optical resolution
J. Biomed. Opt. 13(6), 060504 (1 November 2008) https://doi.org/10.1117/1.3041496
TOPICS: Monte Carlo methods, Photon transport, Parallel computing, Graphics processing units, Data modeling, Computer simulations, Scattering, Tissues, Biomedical optics, Optical properties
Bing Yu, Justin Lo, Thomas Kuech, Gregory Palmer, Janelle Bender, Nirmala Ramanujam
J. Biomed. Opt. 13(6), 060505 (1 November 2008) https://doi.org/10.1117/1.3041500
TOPICS: Tissue optics, Scattering, Absorption, Photodiodes, Optical properties, Tissues, Imaging spectroscopy, In vivo imaging, Imaging systems, Diffuse reflectance spectroscopy
J. Biomed. Opt. 13(6), 060506 (1 November 2008) https://doi.org/10.1117/1.3046716
TOPICS: Blood circulation, Optical coherence tomography, Heart, Doppler tomography, Doppler effect, Hemodynamics, Confocal microscopy, Structural imaging, 3D image processing, Physiology
Research Papers
Venkat Ramshesh, John Lemasters
J. Biomed. Opt. 13(6), 064001 (1 November 2008) https://doi.org/10.1117/1.3027503
TOPICS: Luminescence, Europium, Confocal microscopy, Microscopy, Microscopes, Rhodamine, Imaging systems, Multiphoton microscopy, Laser scanners, Signal to noise ratio
Matija Milanic, Boris Majaron, J. Stuart Nelson
J. Biomed. Opt. 13(6), 064002 (1 November 2008) https://doi.org/10.1117/1.2998477
TOPICS: Optical filters, Profiling, Signal to noise ratio, Tissues, Interference (communication), Absorption, Sensors, Temperature metrology, Numerical simulations, Infrared radiation
J. Biomed. Opt. 13(6), 064003 (1 November 2008) https://doi.org/10.1117/1.2998480
TOPICS: Blood circulation, Doppler effect, Optical coherence tomography, Blood vessels, Eye, Veins, Retina, Doppler tomography, Laser beam diagnostics, Optic nerve
T. J. Harvey, Elsa Faria, Alex Henderson, Ehsan Gazi, A. D. Ward, N. W. Clarke, Mick Brown, Richard Snook, Peter Gardner
J. Biomed. Opt. 13(6), 064004 (1 November 2008) https://doi.org/10.1117/1.2999609
TOPICS: Raman spectroscopy, Principal component analysis, Backscatter, Prostate, Bladder cancer, Proteins, Optical tweezers, Bladder, Laser scattering, Cancer
Terry Gaige, Hyuk-Sang Kwon, Guangping Dai, Victor Cabral, Ruopeng Wang, Yoon Sung Nam, Bevin Engelward, Van Wedeen, Peter So, Richard Gilbert
J. Biomed. Opt. 13(6), 064005 (1 November 2008) https://doi.org/10.1117/1.3046724
TOPICS: Diffusion, Tissues, Structured optical fibers, Tongue, Magnetic resonance imaging, Structural analysis, 3D image processing, Objectives, Microscopes, Tissue optics
Timmy Floume, Richard Syms, Ara Darzi, George Hanna
J. Biomed. Opt. 13(6), 064006 (1 November 2008) https://doi.org/10.1117/1.3006062
TOPICS: Scattering, Tissue optics, Tissues, Absorption, Signal attenuation, Light scattering, Geometrical optics, Transmittance, Radio optics, Biomedical optics
Youngwoo Bae, J. Stuart Nelson, Byungjo Jung
J. Biomed. Opt. 13(6), 064007 (1 November 2008) https://doi.org/10.1117/1.3006056
TOPICS: Skin, Light sources, Image analysis, Color imaging, Lamps, Biological research, Polarization, Chromophores, Image enhancement, Image processing
Olivier La Schiazza, Josef Bille
J. Biomed. Opt. 13(6), 064008 (1 November 2008) https://doi.org/10.1117/1.2999607
TOPICS: Luminescence, Auto-fluorescence imaging, Microscopes, Scanning laser ophthalmoscopes, Imaging systems, Diagnostics, Eye, Absorption, Molecules, Photons
Mila Boncheva, Feng Tay, Sergei Kazarian
J. Biomed. Opt. 13(6), 064009 (1 November 2008) https://doi.org/10.1117/1.3006072
TOPICS: Skin, FT-IR spectroscopy, Absorbance, Imaging spectroscopy, Infrared imaging, Spectroscopy, Reflection, Proteins, Image resolution, Sensors
Wanxin Sun, Shi Chang, Dean Tai, Nancy Tan, Guangfa Xiao, Huihuan Tang, Hanry Yu
J. Biomed. Opt. 13(6), 064010 (1 November 2008) https://doi.org/10.1117/1.3041159
TOPICS: Collagen, Liver, Second-harmonic generation, Tissues, Microscopy, Optical fibers, Imaging systems, Optical microscopy, Harmonic generation, Tissue optics
Brian Lund, David Lund, Peter Edsall
J. Biomed. Opt. 13(6), 064011 (1 November 2008) https://doi.org/10.1117/1.3013455
TOPICS: Wavefronts, Eye, Adaptive optics, Retina, In vivo imaging, Laser damage threshold, Colorimetry, Laser induced damage, In vitro testing, Telescopes
Ina Pavlova, Crystal Redden Weber, Richard Schwarz, Michelle Williams, Adel El-Naggar, Ann Gillenwater, Rebecca Richards-Kortum
J. Biomed. Opt. 13(6), 064012 (1 November 2008) https://doi.org/10.1117/1.3006066
TOPICS: Luminescence, Monte Carlo methods, Photons, Tissue optics, Tissues, Scattering, Signal detection, Absorption, Fluorescence spectroscopy, Optical properties
L. C. Sorensen, T. S. Leung, Gorm Greisen
J. Biomed. Opt. 13(6), 064013 (1 November 2008) https://doi.org/10.1117/1.3013454
TOPICS: Near infrared spectroscopy, Oxygen, Sensors, Signal attenuation, Tissue optics, Tissues, Calibration, Head, Spectroscopy, Manufacturing
Joseph Foley, Martin Muschol
J. Biomed. Opt. 13(6), 064015 (1 November 2008) https://doi.org/10.1117/1.3013326
TOPICS: Luminescence, Optical filters, Tissue optics, Tissues, Optical recording, Action potentials, Spectrophotometry, Linear filtering, Bandpass filters, Charge-coupled devices
Crystal Redden Weber, Richard Schwarz, Edward Atkinson, Dennis Cox, Calum MacAulay, Michele Follen, Rebecca Richards-Kortum
J. Biomed. Opt. 13(6), 064016 (1 November 2008) https://doi.org/10.1117/1.3013307
TOPICS: Reflectivity, Luminescence, Tissues, Data modeling, Tissue optics, Optical properties, In vivo imaging, Scattering, Monte Carlo methods, Model-based design
Dodanim Talavera-Adame, Yizhi Xiong, Tong Zhao, Ana Arias, M. Rocio Sierra-Honigmann, Daniel Farkas
J. Biomed. Opt. 13(6), 064017 (1 November 2008) https://doi.org/10.1117/1.3028010
TOPICS: Content addressable memory, Image analysis, Control systems, Blood vessels, Molecules, In vivo imaging, Surgery, MATLAB, Fractal analysis, Image processing
Samuel Wallace, Janna Morrison, Kimberly Botting, Tak Kee
J. Biomed. Opt. 13(6), 064018 (1 November 2008) https://doi.org/10.1117/1.3027970
TOPICS: Second-harmonic generation, Microscopy, Heart, Signal to noise ratio, Visualization, Luminescence, Point spread functions, Image resolution, Polarization, Fetus
J. Biomed. Opt. 13(6), 064019 (1 November 2008) https://doi.org/10.1117/1.3028008
TOPICS: Error analysis, Absorption, Near infrared spectroscopy, Tissues, Tissue optics, Skin, Monte Carlo methods, Chromophores, Photons, Ischemia
Kazuya Aizawa, Shunichi Sato, Daizoh Saitoh, Hiroshi Ashida, Minoru Obara
J. Biomed. Opt. 13(6), 064020 (1 November 2008) https://doi.org/10.1117/1.3028005
TOPICS: Tissues, Blood, Photoacoustic spectroscopy, Skin, Wound healing, Hemodynamics, Injuries, Signal processing, Blood vessels, Oxygen
Kapil Bambardekar, Aditya Dharmadhikari, Jayashree Dharmadhikari, Deepak Mathur, Shobhona Sharma
J. Biomed. Opt. 13(6), 064021 (1 November 2008) https://doi.org/10.1117/1.3037342
TOPICS: Optical tweezers, Luminescence, Blood, Video, Curium, Liquids, Roads, Microscopy, Laser optics, Data modeling
J. Biomed. Opt. 13(6), 064022 (1 November 2008) https://doi.org/10.1117/1.3041704
TOPICS: Luminescence, Diagnostics, Endoscopy, Tissue optics, Reflectivity, Tissues, Fluorescence spectroscopy, Imaging spectroscopy, Lung, Optical properties
J. Biomed. Opt. 13(6), 064023 (1 November 2008) https://doi.org/10.1117/1.3041710
TOPICS: Laser speckle imaging, Glucose, Cerebral blood flow, Blood circulation, Ischemic stroke, Speckle, Brain, Printed circuit board testing, Capillaries, Oxygen
Nibu George, Frits de Mul, Qingjun Qiu, Gerhard Rakhorst, Harm Schutte
J. Biomed. Opt. 13(6), 064024 (1 November 2008) https://doi.org/10.1117/1.3041164
TOPICS: Endoscopes, In vivo imaging, Calibration, Visualization, High speed imaging, Image resolution, Video, 3D image processing, Biomedical optics, Semiconductor lasers
C. Usha Devi, R. S. Bharat Chandran, Ram Vasu, Ajay Sood
J. Biomed. Opt. 13(6), 064025 (1 November 2008) https://doi.org/10.1117/1.3041169
TOPICS: Modulation, Absorption, Tissue optics, Transducers, Scattering, Ultrasonography, Optical properties, Acoustics, Tissues, Biomedical optics
Toshiaki Nakagawa, Takayoshi Suzuki, Yoshinori Hayashi, Yutaka Mizukusa, Yuji Hatanaka, Kyoko Ishida, Takeshi Hara, Hiroshi Fujita, Tetsuya Yamamoto
J. Biomed. Opt. 13(6), 064026 (1 November 2008) https://doi.org/10.1117/1.3041711
TOPICS: Optic nerve, Head, Cameras, Image registration, Biological research, Image processing, Denoising, Stereoscopic cameras, Eye, 3D image processing
Jangwoen Lee, Jae Gwan Kim, Sari Mahon, Bruce Tromberg, Kathy Ryan, Victor Convertino, Caroline Rickards, Kathryn Osann, Matthew Brenner
J. Biomed. Opt. 13(6), 064027 (1 November 2008) https://doi.org/10.1117/1.3041712
TOPICS: Tissues, Blood, Tissue optics, Rhodamine B, Heart, Oxygen, Tolerancing, Diffuse optical spectroscopy, Hemodynamics, Injuries
Pascale Vérant, Clément Ricard, Raphael Serduc, Jean-Claude Vial, Boudewijn van der Sanden
J. Biomed. Opt. 13(6), 064028 (1 November 2008) https://doi.org/10.1117/1.3041163
TOPICS: In vivo imaging, Blood brain barrier, Brain, Blood, Neurons, Neuroimaging, Two photon excitation microscopy, Plasma, Two photon imaging, Tissues
J. Biomed. Opt. 13(6), 064029 (1 November 2008) https://doi.org/10.1117/1.3041497
TOPICS: Optical properties, Absorption, Tissue optics, Image restoration, Breast, Reconstruction algorithms, Ultrasonography, Silicon, Tissues, Chest
J. Biomed. Opt. 13(6), 064030 (1 November 2008) https://doi.org/10.1117/1.3041498
TOPICS: Breast, Data modeling, Mammography, Tissue optics, Breast cancer, Biological research, Spectroscopy, Detection and tracking algorithms, Tissues, Error analysis
Andrei Zvyagin, Xin Zhao, A. Gierden, Washington Sanchez, Justin Ross, Michael Roberts
J. Biomed. Opt. 13(6), 064031 (1 November 2008) https://doi.org/10.1117/1.3041492
TOPICS: Skin, Zinc oxide, Nanoparticles, In vivo imaging, Ultraviolet radiation, Luminescence, Scanning electron microscopy, In vitro testing, Absorption, Particles
Vladimir Tychinsky, Aleksandr Kretushev, Ivan Klemyashov, Tatiana Vyshenskaia, Natalya Filippova, Natan Raikhlin, Alexander Shtil
J. Biomed. Opt. 13(6), 064032 (1 November 2008) https://doi.org/10.1117/1.3042241
TOPICS: Microscopy, Biological research, Refractive index, Biomedical optics, Microscopes, Visualization, Electron microscopy, Proteins, Temporal resolution, Electronics
J. Biomed. Opt. 13(6), 064033 (1 November 2008) https://doi.org/10.1117/1.3042260
TOPICS: Fabry–Perot interferometers, Ultrasonography, Photoacoustic imaging, Transducers, Polymers, Acoustics, 3D image processing, Laser beam diagnostics, Ferroelectric polymers, Signal detection
Sasha McGee, Jelena Mirkovic, Vartan Mardirossian, Alphi Elackattu, Chung-Chieh Yu, Sadru Kabani, George Gallagher, Robert Pistey, Luis Galindo, Kamran Badizadegan, Zhi Wang, Ramachandra Dasari, Michael Feld, Gregory Grillone
J. Biomed. Opt. 13(6), 064034 (1 November 2008) https://doi.org/10.1117/1.2992139
TOPICS: Luminescence, Collagen, Tissues, Model-based design, Spectroscopy, Fermium, Frequency modulation, Reflectivity, Data modeling, Absorption
Seonkyung Lee, Danthu Vu, Michael Hinds, Steven Davis, Alvin Liang, Tayyaba Hasan
J. Biomed. Opt. 13(6), 064035 (1 November 2008) https://doi.org/10.1117/1.3042265
TOPICS: Oxygen, Photodynamic therapy, Tumors, Semiconductor lasers, Picosecond phenomena, Pulsed laser operation, Optical filters, In vivo imaging, Laser therapeutics, Diodes
Hirokazu Inoue, Takashi Murakami, Takashi Ajiki, Mayumi Hara, Yuichi Hoshino, Eiji Kobayashi
J. Biomed. Opt. 13(6), 064036 (1 November 2008) https://doi.org/10.1117/1.3042266
TOPICS: Wound healing, Skin, Transplantation, Medicine, Tissues, Bone, Photons, Medical research, In vivo imaging, Luminescence
Edrun Schnell, Live Eikenes, Ingunn Tufto, Arne Erikson, Aphirak Juthajan, Mikael Lindgren, Catharina de Lange Davies
J. Biomed. Opt. 13(6), 064037 (1 November 2008) https://doi.org/10.1117/1.3042274
TOPICS: Diffusion, Molecules, Luminescence, Collagen, Tumors, Laser scanners, Mathematical modeling, Tissues, Convolution, Microscopes
Sung-Ho Han, Salman Farshchi-Heydari, David Hall
J. Biomed. Opt. 13(6), 064038 (1 November 2008) https://doi.org/10.1117/1.3042271
TOPICS: Luminescence, Optical properties, Scattering, Biological research, In vivo imaging, Light, Sensors, Optical imaging, Tissue optics, Continuous wave operation
William Stoothoff, Brian Bacskai, Bradley Hyman
J. Biomed. Opt. 13(6), 064039 (1 November 2008) https://doi.org/10.1117/1.3050422
TOPICS: Second-harmonic generation, Neurons, Axons, Signal processing, Signal detection, Harmonic generation, Polarizers, Proteins, Luminescence, Visualization
J. Biomed. Opt. 13(6), 064040 (1 November 2008) https://doi.org/10.1117/1.3050447
TOPICS: Gold, Picosecond phenomena, Surface enhanced Raman spectroscopy, Microwave radiation, Medium wave, Raman scattering, Rhodium, Nanostructures, Raman spectroscopy, Surface roughness
Cho-Shuen Hsieh, Ching-Yi Ko, Szu-Yu Chen, Tzu-Ming Liu, Jian-Shiung Wu, Chin-Hwa Hu, Chi-Kuang Sun
J. Biomed. Opt. 13(6), 064041 (1 November 2008) https://doi.org/10.1117/1.3050423
TOPICS: Nerve, Second-harmonic generation, In vivo imaging, Molybdenum, Optical fibers, Nervous system, Microscopy, Harmonic generation, Luminescence, Proteins
J. Biomed. Opt. 13(6), 064042 (1 November 2008) https://doi.org/10.1117/1.3050424
TOPICS: Double positive medium, Scattering, Tissue optics, Absorption, Data modeling, Optical properties, Near infrared, Reflectivity, Optical testing, Optical phantoms
Jeffrey Dunn, Qiong Zhang, Ying Yu, Sathyanarayanan Srinivasan, Michael Smith, R. Anthony Shaw
J. Biomed. Opt. 13(6), 064043 (1 November 2008) https://doi.org/10.1117/1.3000431
TOPICS: Near infrared spectroscopy, Near infrared, Brain, Blood, Hypoxia, Spectroscopy, Calibration, Magnetic resonance imaging, Radiology, Medicine
Errata
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