journal of biomedical optics
VOL. 14 · NO. 3 | May 2009
CONTENTS
IN THIS ISSUE

JBO Letters (10)
Errata (2)
JBO Letters
J. Biomed. Opt. 14(3), 030501 (1 May 2009) https://doi.org/10.1117/1.3127202
TOPICS: Tumors, Luminescence, Fluorescence tomography, Tomography, Imaging systems, Signal detection, Tissues, Calibration, Fluorescence spectroscopy, Single photon detectors
Silvia Santos, Kengyeh Chu, Daryl Lim, Nenad Bozinovic, Timothy Ford, Claire Hourtoule, Aaron Bartoo, Satish Singh, Jerome Mertz
J. Biomed. Opt. 14(3), 030502 (1 May 2009) https://doi.org/10.1117/1.3130266
TOPICS: Image fusion, Microscopy, Luminescence, Endomicroscopy, Linear filtering, Image resolution, Image processing, Spatial frequencies, Video, Modulation
J. Biomed. Opt. 14(3), 030505 (1 May 2009) https://doi.org/10.1117/1.3146813
TOPICS: Intravascular ultrasound, Blood, Optical fibers, Arteries, Prototyping, Luminescence, Fluorescence spectroscopy, Ultrasonography, Tissue optics, In vitro testing
J. Biomed. Opt. 14(3), 030506 (1 May 2009) https://doi.org/10.1117/1.3149852
TOPICS: Near infrared, Tumors, Prostate, In vivo imaging, Optical tomography, Tissues, Absorption, Tomography, Ultrasonography, Scattering
J. Biomed. Opt. 14(3), 030508 (1 May 2009) https://doi.org/10.1117/1.3153842
TOPICS: Femtosecond fiber lasers, Fiber lasers, Second-harmonic generation, Skin, Laser development, Tissues, Femtosecond phenomena, Luminescence, Pulsed laser operation, Fiber amplifiers
Nikolaos Deliolanis, Joshua Dunham, Thomas Wurdinger, Jose-Luiz Figueiredo, Tannous Bakhos, Vasilis Ntziachristos
J. Biomed. Opt. 14(3), 030509 (1 May 2009) https://doi.org/10.1117/1.3149854
J. Biomed. Opt. 14(3), 030510 (1 May 2009) https://doi.org/10.1117/1.3156801
TOPICS: Light scattering, Scattering, Tissue optics, Anisotropy, Backscatter, Image resolution, Scattering media, Image acquisition, Imaging systems, Tissues
Xian Chen, Zhilie Tang, Yongheng He, Haifeng Liu, Yadong Wei, Yongbo Wu
J. Biomed. Opt. 14(3), 030511 (1 May 2009) https://doi.org/10.1117/1.3155525
TOPICS: Acoustics, Imaging systems, Photoacoustic imaging, Reconstruction algorithms, Tomography, Polymethylmethacrylate, Data acquisition, Signal detection, Sensors, Adhesives
J. Biomed. Opt. 14(3), 030512 (1 May 2009) https://doi.org/10.1117/1.3155523
TOPICS: Speckle, Optical coherence tomography, Doppler tomography, Doppler effect, Mirrors, Computer programming, In vitro testing, In vivo imaging, Image segmentation, Tissues
J. Biomed. Opt. 14(3), 030513 (1 May 2009) https://doi.org/10.1117/1.3156813
TOPICS: Confocal microscopy, Visualization, Refractive index, Microscopes, Monochromatic aberrations, Gold, Nanoparticles, Microscopy, Yeast, Glasses
Research Papers
J. Biomed. Opt. 14(3), 034001 (1 May 2009) https://doi.org/10.1117/1.3127200
TOPICS: Absorption, Oxygen, Blood, Scattering, Anisotropy, Mie scattering, Monte Carlo methods, Biomedical optics, Optical spheres, Integrating spheres
Gideon Ho, Joseph Barbenel, Mary Grant
J. Biomed. Opt. 14(3), 034002 (1 May 2009) https://doi.org/10.1117/1.3127201
TOPICS: Collagen, Skin, Laser therapeutics, Tissues, Optical fibers, Laser tissue interaction, Matrices, Laser irradiation, Holmium, Helium neon lasers
J. Biomed. Opt. 14(3), 034004 (1 May 2009) https://doi.org/10.1117/1.3127204
TOPICS: Near infrared spectroscopy, Wavelets, Functional magnetic resonance imaging, Data modeling, Hemodynamics, Statistical analysis, Autoregressive models, Wavelet transforms, Brain, Interference (communication)
J. Biomed. Opt. 14(3), 034005 (1 May 2009) https://doi.org/10.1117/1.3127203
TOPICS: Microelectromechanical systems, Mirrors, Endoscopy, GRIN lenses, Scanners, Single mode fibers, Endoscopes, Femtosecond phenomena, Dispersion, Signal attenuation
Qun Zhu, Ian Stockford, John Crowe, Stephen Morgan
J. Biomed. Opt. 14(3), 034006 (1 May 2009) https://doi.org/10.1117/1.3130268
TOPICS: Polarization, Scattering, Monte Carlo methods, Dichroic materials, Reflection, Tissues, Target detection, Natural surfaces, Tissue optics, Polarizers
Christopher Sramek, Yannis Paulus, Hiroyuki Nomoto, Philip Huie, Jefferson Brown, Daniel Palanker
J. Biomed. Opt. 14(3), 034007 (1 May 2009) https://doi.org/10.1117/1.3130282
TOPICS: Absorption, Laser coagulation, Retina, Thermal modeling, Transmittance, Tissues, Scattering, Temperature metrology, Data modeling, In vivo imaging
J. Biomed. Opt. 14(3), 034008 (1 May 2009) https://doi.org/10.1117/1.3130323
TOPICS: Gold, Optical coherence tomography, Neptunium, In vivo imaging, Tissues, Cancer, Nanoparticles, Manganese, Signal detection, Scattering
J. Biomed. Opt. 14(3), 034009 (1 May 2009) https://doi.org/10.1117/1.3130302
TOPICS: Arteries, Raman spectroscopy, Optical fibers, Chemical analysis, Tissues, Data modeling, Remote sensing, Calibration, Error analysis, Proteins
Zhuo Meng, X. Yao, Hui Yao, Yan Liang, Tiegen Liu, Yanni Li, Guanhua Wang, Shoufeng Lan
J. Biomed. Opt. 14(3), 034010 (1 May 2009) https://doi.org/10.1117/1.3130322
TOPICS: Refractive index, Optical coherence tomography, Teeth, Metals, Glasses, Cements, In vitro testing, Dental caries, Optoelectronics, Polarization
Jean-Michael Andanson, Jonathan Hadgraft, Sergei Kazarian
J. Biomed. Opt. 14(3), 034011 (1 May 2009) https://doi.org/10.1117/1.3130324
TOPICS: Skin, Diffusion, Bioalcohols, FT-IR spectroscopy, Infrared spectroscopy, Imaging spectroscopy, Spectroscopy, Sensors, Crystals, Absorbance
Daniel Gareau, Julie Karen, Stephen Dusza, Marie Tudisco, Kishwer Nehal, Milind Rajadhyaksha
J. Biomed. Opt. 14(3), 034012 (1 May 2009) https://doi.org/10.1117/1.3130331
TOPICS: Confocal microscopy, Tumors, Mohs surgery, Surgery, Luminescence, Tissues, Microscopy, Pathology, Skin, Image resolution
Karen Esmonde-White, Gurjit Mandair, Farhang Raaii, Jon Jacobson, Bruce Miller, Andrew Urquhart, Blake Roessler, Michael Morris
J. Biomed. Opt. 14(3), 034013 (1 May 2009) https://doi.org/10.1117/1.3130338
TOPICS: Raman spectroscopy, Proteins, Chemical analysis, Microfluidics, Spectroscopy, Diagnostics, Biological research, Crystals, Radiography, Microscopes
J. Biomed. Opt. 14(3), 034014 (1 May 2009) https://doi.org/10.1117/1.3130345
TOPICS: Optical coherence tomography, Microfluidics, Microfluidic imaging, Coherence imaging, Doppler tomography, Tissues, 3D image processing, Optical imaging, Tissue engineering, 3D modeling
Chao Zhou, Stephanie Eucker, Turgut Durduran, Guoqiang Yu, Jill Ralston, Stuart Friess, Rebecca Ichord, Susan Margulies, Arjun Yodh
J. Biomed. Opt. 14(3), 034015 (1 May 2009) https://doi.org/10.1117/1.3146814
TOPICS: Injuries, Hemodynamics, Brain, Head, Blood, Fermium, Traumatic brain injury, Cerebral blood flow, Frequency modulation, Tissues
J. Biomed. Opt. 14(3), 034016 (1 May 2009) https://doi.org/10.1117/1.3147390
TOPICS: Nanoparticles, Gold, 3D image processing, Scattering, Lung cancer, Microscopes, Glasses, Microscopy, Optical microscopy, Particles
Shinji Umeyama, Toru Yamada
J. Biomed. Opt. 14(3), 034017 (1 May 2009) https://doi.org/10.1117/1.3147402
TOPICS: Skull, Near infrared spectroscopy, Monte Carlo methods, Tissue optics, Signal attenuation, Chromophores, Absorption, Optical testing, Head, Biomedical optics
Manojit Pramanik, Magdalena Swierczewska, Danielle Green, Balaji Sitharaman, Lihong Wang
J. Biomed. Opt. 14(3), 034018 (1 May 2009) https://doi.org/10.1117/1.3147407
TOPICS: Single walled carbon nanotubes, Blood, Acquisition tracking and pointing, Signal generators, Tissues, Carbon, Absorption, Imaging systems, Minerals, Photoacoustic tomography
J. Biomed. Opt. 14(3), 034019 (1 May 2009) https://doi.org/10.1117/1.3147422
TOPICS: Photonic crystal fibers, Sapphire lasers, In vivo imaging, Laser sources, Coherence (optics), Multiphoton microscopy, Skin, Fluorescent markers, Tissues, Beam splitters
Ronald Xu, Jiwei Huang, Jeff Xu, Duxin Sun, George Hinkle, Edward Martin, Stephen Povoski
J. Biomed. Opt. 14(3), 034020 (1 May 2009) https://doi.org/10.1117/1.3147424
TOPICS: Tumors, Luminescence, Absorption, Plasma, Indocyanine green, Ultrasonography, Near infrared, Functional imaging, Cancer, Imaging systems
Pouyan Mohajerani, Ali Adibi, Joshua Kempner, Wael Yared
J. Biomed. Opt. 14(3), 034021 (1 May 2009) https://doi.org/10.1117/1.3149855
TOPICS: Luminescence, Tissue optics, Tumors, Tomography, In vivo imaging, Fluorescence tomography, Optical tomography, Tissues, Breast, Lung
J. Biomed. Opt. 14(3), 034022 (1 May 2009) https://doi.org/10.1117/1.3149862
TOPICS: Luminescence, Liver, Tissue optics, In vivo imaging, Blood, Absorption, Chromophores, Scattering, Tissues, Fluorescence spectroscopy
J. Biomed. Opt. 14(3), 034023 (1 May 2009) https://doi.org/10.1117/1.3153898
TOPICS: Holography, Ear, Optoelectronics, Image processing, Acoustics, Motion measurement, Phase shift keying, Computing systems, Prototyping, Thulium
Andreea Trache, Soon-Mi Lim
J. Biomed. Opt. 14(3), 034024 (1 May 2009) https://doi.org/10.1117/1.3155517
TOPICS: Confocal microscopy, Atomic force microscopy, Cameras, Microscopes, Video, Optical filters, Microscopy, Luminescence, Semiconductor lasers, Real time imaging
J. Biomed. Opt. 14(3), 034025 (1 May 2009) https://doi.org/10.1117/1.3149863
TOPICS: Doppler effect, Skin, Imaging systems, Blood, Tissues, Blood circulation, Speckle, Tissue optics, Mercury, Laser applications
Sergio Hernandez, Vicente Rodríguez-Armas, Juan Pérez, F. Martin, M. Castellano, J. Gonzalez-Mora
J. Biomed. Opt. 14(3), 034026 (1 May 2009) https://doi.org/10.1117/1.3149864
TOPICS: Scattering, Absorbance, Absorption, Tissues, Tissue optics, Diffuse reflectance spectroscopy, In vitro testing, Reflectance spectroscopy, Lanthanum, Biological research
Sven Meissner, Gregor Müller, Julia Walther, Henning Morawietz, Edmund Koch
J. Biomed. Opt. 14(3), 034027 (1 May 2009) https://doi.org/10.1117/1.3149865
TOPICS: Virtual colonoscopy, Arteries, Optical coherence tomography, Veins, In vivo imaging, Mouse models, Tissues, Sensors, Medicine, Image resolution
Khiet Hoang, Ahamd Edris, Jianping Su, David Mukai, Sari Mahon, Artiom Petrov, Morton Kern, Chowdhury Ahsan, Zhongping Chen, Bruce Tromberg, Jagat Narula, Matthew Brenner
J. Biomed. Opt. 14(3), 034028 (1 May 2009) https://doi.org/10.1117/1.3153895
TOPICS: Optical coherence tomography, Blood, Coherence imaging, Image quality, Light scattering, Optical imaging, Signal attenuation, Scattering, Image resolution, Oxygen
Joerg Martini, Peter Kiesel, Jeffrey Roe, Richard Bruce
J. Biomed. Opt. 14(3), 034029 (1 May 2009) https://doi.org/10.1117/1.3153848
TOPICS: Glucose, Fabry–Perot interferometers, Vertical cavity surface emitting lasers, Temperature metrology, Sensors, Refractive index, Molecules, Calibration, Blood, Light sources
Céline Boutin, Yann Roche, Christine Millot, Regis Deturche, Pascal Royer, Michel Manfait, Jérôme Plain, Pierre Jeannesson, Jean-Marc Millot, Rodolphe Jaffiol
J. Biomed. Opt. 14(3), 034030 (1 May 2009) https://doi.org/10.1117/1.3155518
TOPICS: Plasma, Diffusion, Fluorescence correlation spectroscopy, Cancer, Microfluidics, Molecules, Luminescence, Resistance, Chromium, Modulators
J. Biomed. Opt. 14(3), 034031 (1 May 2009) https://doi.org/10.1117/1.3153894
TOPICS: Modulation, Absorption, Acousto-optics, Calibration, Tissue optics, Tissues, Imaging systems, Systems modeling, Data modeling, Spatial resolution
Michael McDonald, Ladislav Jankovic, Khalid Shahzad, Michael Burcher, King Li
J. Biomed. Opt. 14(3), 034032 (1 May 2009) https://doi.org/10.1117/1.3155519
TOPICS: Photoacoustic spectroscopy, Ultrasonography, Proteins, Acoustics, Tissues, Transducers, Photoacoustic imaging, Absorption, Laser energy, Backscatter
Reinhold Eichhorn, Gerd Wessler, Matthias Scholz, Dieter Leupold, Goran Stankovic, Susanne Buder, Markus Stuecker, Klaus Hoffmann
J. Biomed. Opt. 14(3), 034033 (1 May 2009) https://doi.org/10.1117/1.3155511
TOPICS: Luminescence, Melanoma, Skin, Tissues, Absorption, Diagnostics, Solids, Laser tissue interaction, Measurement devices, Dye lasers
J. Biomed. Opt. 14(3), 034034 (1 May 2009) https://doi.org/10.1117/1.3155512
TOPICS: Tumors, Tissues, Scattering, Image segmentation, Error analysis, Scatter measurement, Reflectivity, Imaging systems, Absorption, Surgery
J. Biomed. Opt. 14(3), 034035 (1 May 2009) https://doi.org/10.1117/1.3155524
TOPICS: Imaging systems, Optical coherence tomography, Bronchoscopy, Ultrasonography, Image resolution, Tissues, Biopsy, Diagnostics, Bone, Cartilage
Thomas Burghardt, Katalin Ajtai
J. Biomed. Opt. 14(3), 034036 (1 May 2009) https://doi.org/10.1117/1.3155520
TOPICS: Interfaces, Microscopes, Luminescence, Glasses, Surface plasmons, Objectives, Near field, Metals, Molecules, Dielectrics
J. Biomed. Opt. 14(3), 034038 (1 May 2009) https://doi.org/10.1117/1.3155522
TOPICS: Skull, Scattering, Reflectivity, Laser scattering, Confocal microscopy, Luminescence, Bone, Two photon imaging, Two photon excitation microscopy, In vivo imaging
Merete Raarup, Anja Fjorback, Stig Jensen, Heidi Muller, Maj Kjaergaard, Hanne Poulsen, Ove Wiborg, Jens Nyengaard
J. Biomed. Opt. 14(3), 034039 (1 May 2009) https://doi.org/10.1117/1.3103338
TOPICS: Fluorescent proteins, Diffusion, Luminescence, Confocal microscopy, Microscopes, Sensors, Fluorescence resonance energy transfer, Optical filters, Electron microscopy, Signal detection
J. Biomed. Opt. 14(3), 034040 (1 May 2009) https://doi.org/10.1117/1.3156821
TOPICS: Tissues, Optical coherence tomography, Tissue optics, Tumors, Biopsy, Breast, Reflectivity, Diagnostics, Coherence imaging, Image processing
J. Biomed. Opt. 14(3), 034041 (1 May 2009) https://doi.org/10.1117/1.3156823
TOPICS: Absorption, Chromophores, Scattering, Diffuse optical tomography, Mie scattering, Laser scattering, Tissues, Sensors, Continuous wave operation
Xiangqun Xu, Qiuhong Zhu, Chaojie Sun
J. Biomed. Opt. 14(3), 034042 (1 May 2009) https://doi.org/10.1117/1.3156827
TOPICS: Skin, Ultrasonography, Optical clearing, Transmittance, Optical coherence tomography, In vitro testing, Sun, Surface plasmons, Medium wave, In vivo imaging
Debra Huffman, Yulia Serebrennikova, Jennifer Smith, German Leparc, Luis Garcia-Rubio
J. Biomed. Opt. 14(3), 034043 (1 May 2009) https://doi.org/10.1117/1.3156837
TOPICS: Blood, Microorganisms, Diffuse reflectance spectroscopy, Deconvolution, Reflectivity, Scattering, Particles, Mie scattering, Bacteria, Carbon monoxide
J. Biomed. Opt. 14(3), 034044 (1 May 2009) https://doi.org/10.1117/1.3156839
TOPICS: Inverse optics, Biomedical optics, Inverse problems, Optical properties, Absorption, Medical physics, Signal to noise ratio, Tissue optics, Image restoration, Error analysis
J. Biomed. Opt. 14(3), 034045 (1 May 2009) https://doi.org/10.1117/1.3156840
TOPICS: Optical properties, Absorption, Scattering, Calibration, Spatial frequencies, Modulation, Optical testing, Data acquisition, Tissue optics, 3D image processing
Fernando Gasca, Lukas Ramrath, Gereon Hüttmann, Achim Schweikard
J. Biomed. Opt. 14(3), 034046 (1 May 2009) https://doi.org/10.1117/1.3156841
TOPICS: Image segmentation, Optical coherence tomography, Speckle, Tissue optics, Image filtering, Scattering, Tissues, Brain, Optical fibers, Digital filtering
J. Biomed. Opt. 14(3), 034047 (1 May 2009) https://doi.org/10.1117/1.3156842
TOPICS: Venus, Proteins, Fluorescent proteins, Luminescence, Anisotropy, Chromophores, Ultraviolet radiation, Fluorescence resonance energy transfer, Fluorescence anisotropy, Green fluorescent protein
J. Biomed. Opt. 14(3), 034048 (1 May 2009) https://doi.org/10.1117/1.3139850
TOPICS: Confocal microscopy, Mirrors, Imaging systems, Microscopes, Head, Luminescence, Sensors, Tissues, Objectives, Fiber optics
Benjamin Rappaz, Elena Cano, Tristan Colomb, Jonas Kuhn, Christian Depeursinge, Viesturs Simanis, Pierre Magistretti, Pierre Marquet
J. Biomed. Opt. 14(3), 034049 (1 May 2009) https://doi.org/10.1117/1.3147385
TOPICS: Yeast, Digital holography, Microscopy, Holography, Phase shifts, Brain, Proteins, Image processing, Scanning electron microscopy, Quantitative analysis
J. Biomed. Opt. 14(3), 034050 (1 May 2009) https://doi.org/10.1117/1.3149853
TOPICS: Confocal microscopy, Luminescence, Reflectivity, Tumors, Collagen, Tissues, Surgery, Tissue optics, Pathology, Mohs surgery
Errata
Jean-Michel Andanson, Sergei Kazarian, Jonathan Hadgraft
J. Biomed. Opt. 14(3), 039801 (1 May 2009) https://doi.org/10.1117/1.3157197
TOPICS: FT-IR spectroscopy, Fourier spectroscopy, Imaging spectroscopy, Spectroscopy, Chemical engineering, Pharmacy, Reflectivity
J. Biomed. Opt. 14(3), 039802 (1 May 2009) https://doi.org/10.1117/1.3157198
TOPICS: Tumors, Fluorescence tomography, Medical research, Physics, Roads, Diagnostics, Radiology
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