journal of biomedical optics
VOL. 14 · NO. 5 | September 2009
CONTENTS
IN THIS ISSUE

Editorial (1)
Errata (3)
Editorial
J. Biomed. Opt. 14(5), 050101 (1 September 2009) doi:10.1117/1.3258205
TOPICS: Biomedical optics, Coherence imaging, Preclinical imaging, Fluorescent proteins, Photonics, Raman spectroscopy, Medicine, Databases, Multimedia, Graphic arts
JBO Letters
J. Biomed. Opt. 14(5), 050501 (1 September 2009) doi:10.1117/1.3213569
TOPICS: Mirrors, Eye, Image segmentation, Optical coherence tomography, In vivo imaging, Cornea, Imaging systems, Scanners, Fourier transforms, Spectroscopy
Zhijia Yuan, Bai Chen, H. Ren, Yingtian Pan
J. Biomed. Opt. 14(5), 050502 (1 September 2009) doi:10.1117/1.3223246
TOPICS: Bladder, Optical coherence tomography, Bladder cancer, Speckle, Tissue optics, Cancer, 3D image processing, 3D image enhancement, Imaging systems, Endoscopy
Shuaixia Tan, Hongjun Dai, Juejie Wu, Ning Zhao, Xiaoli Zhang, Jian Xu
J. Biomed. Opt. 14(5), 050503 (1 September 2009) doi:10.1117/1.3227034
TOPICS: Diffusion, Polymers, Molecules, Speckle pattern, Data modeling, Interferometry, Refractive index, Chemistry, Molecular interactions, Charge-coupled devices
J. Biomed. Opt. 14(5), 050504 (1 September 2009) doi:10.1117/1.3233590
TOPICS: Microfluidics, Microfluidic imaging, Tissue optics, Tissues, Doppler tomography, Interference (communication), Scattering, Optical coherence tomography, Tissue engineering, Imaging systems
Joseph Chaiken, Jerry Goodisman, Bin Deng, Rebecca Bussjaeger, George Shaheen
J. Biomed. Opt. 14(5), 050505 (1 September 2009) doi:10.1117/1.3233629
TOPICS: Scattering, Light scattering, Plasma, Luminescence, Capillaries, Tissue optics, Skin, Blood, Tissues, Raman spectroscopy
Irina Larina, Kenryo Furushima, Mary Dickinson, Richard Behringer, Kirill Larin
J. Biomed. Opt. 14(5), 050506 (1 September 2009) doi:10.1117/1.3241044
TOPICS: Optical coherence tomography, Heart, Doppler tomography, Doppler effect, 3D image processing, 3D modeling, Imaging systems, Physiology, Blood circulation, Genetics
Research Papers
Bernhard Lange-Asschenfeldt, Alena Alborova, Daniela Kruger-Corcoran, Alexa Patzelt, Heike Richter, Wolfram Sterry, Axel Kramer, Eggert Stockfleth, Jürgen Lademann
J. Biomed. Opt. 14(5), 054001 (1 September 2009) doi:10.1117/1.3213603
TOPICS: Wound healing, Skin, Tissues, Luminescence, In vivo imaging, Tissue optics, Laser scanners, Microscopy, Dermatology, Optical fibers
Christina Ambrosi, Nader Moazami, Andrew Rollins, Igor Efimov
J. Biomed. Opt. 14(5), 054002 (1 September 2009) doi:10.1117/1.3213604
TOPICS: Optical coherence tomography, Tissues, Heart, Natural surfaces, Optical fibers, Visualization, Imaging systems, Spatial resolution, Arteries, Computed tomography
J. Biomed. Opt. 14(5), 054003 (1 September 2009) doi:10.1117/1.3213602
Jared Stephens, Samarendra Mohanty, Suzanne Genc, Xiangduo Kong, Kyoko Yokomori, Michael Berns
J. Biomed. Opt. 14(5), 054004 (1 September 2009) doi:10.1117/1.3213601
TOPICS: Mirrors, Luminescence, Double sideband modulation, Confocal microscopy, Infrared telescopes, Objectives, Microscopes, Optical tweezers, Ultraviolet radiation, Optical filters
Isabelle Texier Nogues, Mathieu Goutayer, Anabela da Silva, Laurent Guyon, Nadia Djaker, Véronique Josserand, Emmanuelle Neumann, Jerome Bibette, Françoise Vinet
J. Biomed. Opt. 14(5), 054005 (1 September 2009) doi:10.1117/1.3213606
TOPICS: Luminescence, In vivo imaging, Nanoparticles, Quantum efficiency, Particles, Tumors, Optical properties, Magnesium, Absorption, Absorbance
Jean-Michel Maarek, Daniel Holschneider
J. Biomed. Opt. 14(5), 054006 (1 September 2009) doi:10.1117/1.3233652
TOPICS: Blood, Luminescence, Photons, Absorption, Optical testing, Monte Carlo methods, Calibration, Indocyanine green, Scattering, Biological research
J. Biomed. Opt. 14(5), 054007 (1 September 2009) doi:10.1117/1.3227035
TOPICS: Brain, Neuroimaging, Transducers, Imaging systems, Acquisition tracking and pointing, Photoacoustic tomography, In vivo imaging, Photoacoustic spectroscopy, 3D image processing, Brain imaging
Cheng-Kuang Lee, Meng-Tsan Tsai, Hsiang-Chieh Lee, Hsin-Ming Chen, Chun-Ping Chiang, Yih-Ming Wang, Chih-Chung Yang
J. Biomed. Opt. 14(5), 054008 (1 September 2009) doi:10.1117/1.3233653
TOPICS: Optical coherence tomography, Collagen, Mouth, Tissues, Statistical analysis, Photomicroscopy, Photonics, Optoelectronics, Roads, Biopsy
Yuansheng Sun, Cynthia Booker, Sangeeta Kumari, Richard Day, Michael Davidson, Ammasi Periasamy
J. Biomed. Opt. 14(5), 054009 (1 September 2009) doi:10.1117/1.3227036
TOPICS: Fluorescence resonance energy transfer, Microscopy, Fluorescent proteins, Luminescence, Imaging systems, Fluorescence lifetime imaging, Proteins, Argon ion lasers, Sun, Quantum efficiency
Kyle Quinn, Beth Winkelstein
J. Biomed. Opt. 14(5), 054010 (1 September 2009) doi:10.1117/1.3227037
TOPICS: Tissues, Collagen, Tissue optics, Injuries, Signal to noise ratio, Tolerancing, Failure analysis, Kinematics, Data acquisition, Optical alignment
Michael Jaeger, Lea Siegenthaler, Michael Kitz, Martin Frenz
J. Biomed. Opt. 14(5), 054011 (1 September 2009) doi:10.1117/1.3227038
TOPICS: Tissues, Transducers, Tissue optics, Natural surfaces, Acoustics, Speckle, Signal attenuation, Ultrasonography, Reconstruction algorithms, Absorption
John McMurdy, Jonathan Reichner, Zara Mathews, Mary Markey, Sunny Intwala, Gregory Crawford
J. Biomed. Opt. 14(5), 054012 (1 September 2009) doi:10.1117/1.3233654
TOPICS: Absorption, Skin, Diffuse reflectance spectroscopy, Tissues, Reflectivity, Ear, In vivo imaging, Proteins, Digital imaging, Ocean optics
J. Biomed. Opt. 14(5), 054013 (1 September 2009) doi:10.1117/1.3233655
TOPICS: Diffusion, X-rays, Scattering, Tissues, Absorption, 3D modeling, Bone, Optical properties, Optical tomography, X-ray imaging
J. Biomed. Opt. 14(5), 054014 (1 September 2009) doi:10.1117/1.3233916
TOPICS: Ultrasonography, Photoacoustic spectroscopy, Ovary, Imaging systems, Photoacoustic imaging, Transducers, Tissue optics, Ovarian cancer, 3D image processing, Cancer
J. Biomed. Opt. 14(5), 054015 (1 September 2009) doi:10.1117/1.3233946
TOPICS: Gold, Tumors, Optical coherence tomography, Tissues, Tissue optics, In vivo imaging, Natural surfaces, Scattering, Biomedical optics, Signal attenuation
J. Biomed. Opt. 14(5), 054016 (1 September 2009) doi:10.1117/1.3241984
TOPICS: Hemodynamics, Functional magnetic resonance imaging, Brain, Prefrontal cortex, Superposition, Near infrared spectroscopy, Nonlinear optics, Data analysis, Wavelets, Continuous wavelet transforms
Tatsuo Kawarasaki, Kazuhiko Uchiyama, Atsushi Hirao, Sadahiro Azuma, Masayoshi Otake, Masatoshi Shibata, Seiko Tsuchiya, Shin Enosawa, Koichi Takeuchi, Kenjiro Konno, Yoji Hakamata, Hiroyuki Yoshino, Takuya Wakai, Shigeo Ookawara, Hozumi Tanaka, Eiji Kobayashi, Takashi Murakami
J. Biomed. Opt. 14(5), 054017 (1 September 2009) doi:10.1117/1.3241985
TOPICS: Green fluorescent protein, Pancreas, Tissues, Brain, Medical research, Transplantation, Liver, Medicine, Skin, Kidney
Mark van Turnhout, Sander Kranenbarg, Johan van Leeuwen
J. Biomed. Opt. 14(5), 054018 (1 September 2009) doi:10.1117/1.3241986
TOPICS: Collagen, Tissues, Anisotropy, Tissue optics, Birefringence, Biomedical optics, Cartilage, Wave plates, Microscopy, Polarizers
Galit Levin, Anat Shirvan, Hagit Grimberg, Ayelet Reshef, Merav Yogev-Falach, Avi Cohen, Ilan Ziv
J. Biomed. Opt. 14(5), 054019 (1 September 2009) doi:10.1117/1.3253303
TOPICS: Cell death, Luminescence, Tissues, Tumors, Molecular imaging, In vivo imaging, Microscopy, Endoscopy, Intestine, Visualization
Sven Meissner, Lilla Knels, Alexander Krueger, Thea Koch, Edmund Koch
J. Biomed. Opt. 14(5), 054020 (1 September 2009) doi:10.1117/1.3247149
TOPICS: Optical coherence tomography, Lung, 3D image processing, Mechanics, Microscopy, Image segmentation, Tissues, In vivo imaging, 3D modeling, Imaging systems
Murat Canpolat, Mahmut Akyüz, Güzide Gökhan, Inanc Gürer, Recai Tuncer
J. Biomed. Opt. 14(5), 054021 (1 September 2009) doi:10.1117/1.3247151
TOPICS: Tumors, Tissue optics, Brain, Tissues, Spectroscopy, Light scattering, Singular optics, Photons, Scattering, Refraction
Jiahuan Zhai, Ting Li, Zhongxing Zhang, Hui Gong
J. Biomed. Opt. 14(5), 054022 (1 September 2009) doi:10.1117/1.3247152
TOPICS: Near infrared spectroscopy, Hemodynamics, Signal processing, Electrodes, Performance modeling, Prefrontal cortex, Brain, Signal detection, Cognition, Biomedical optics
Abigail Haka, Zoya Volynskaya, Joseph Gardecki, Jonathan Nazemi, Robert Shenk, Nancy Wang, Ramachandra Dasari, Maryann Fitzmaurice, Michael Feld
J. Biomed. Opt. 14(5), 054023 (1 September 2009) doi:10.1117/1.3247154
TOPICS: Raman spectroscopy, Tissues, Diagnostics, Calibration, Breast, Breast cancer, Algorithm development, Surface plasmons, Cancer, Spectroscopy
J. Biomed. Opt. 14(5), 054024 (1 September 2009) doi:10.1117/1.3247155
Jürgen Lademann, Heike Richter, Alena Alborova, D. Humme, Alexa Patzelt, Axel Kramer, K. D. Weltmann, B. Hartmann, C. Ottomann, J. W. Fluhr, P. Hinz, G. Hübner, O. Lademann
J. Biomed. Opt. 14(5), 054025 (1 September 2009) doi:10.1117/1.3247156
TOPICS: Plasma, Skin, Tissues, Dermatology, Ultraviolet radiation, Natural surfaces, In vivo imaging, Quartz, Temperature metrology, Ear
J. Biomed. Opt. 14(5), 054026 (1 September 2009) doi:10.1117/1.3247157
TOPICS: Skin, Second-harmonic generation, Cornea, Signal detection, Confocal microscopy, Multiphoton microscopy, Tissues, Tissue optics, Refractive index, Roads
Bertan Hallacoglu, Richard Matulewicz, Harriet Paltiel, Horacio Padua, Patricio Gargollo, Glenn Cannon, Ahmad Alomari, Angelo Sassaroli, Sergio Fantini
J. Biomed. Opt. 14(5), 054027 (1 September 2009) doi:10.1117/1.3253318
TOPICS: Surgery, Testis, Tissues, Near infrared spectroscopy, Tissue optics, Absorption, Optical fibers, Scattering, Oxygen, Diagnostics
Dong Li, Mildred Yang, Tao Lin, Wei Zheng, Jianan Qu
J. Biomed. Opt. 14(5), 054028 (1 September 2009) doi:10.1117/1.3250293
TOPICS: Cadmium, Luminescence, Microscopy, Proteins, Toxicity, Lithium, Metals, Electron transport, Cell death, Electronics engineering
Moritz Friebel, Kirsten Povel, Hans-Joachim Cappius, Jürgen Helfmann, Martina Meinke
J. Biomed. Opt. 14(5), 054029 (1 September 2009) doi:10.1117/1.3250292
TOPICS: Monte Carlo methods, Composites, Scattering, Optical properties, Reflectivity, Color vision, Absorption, Teeth, Light scattering, Particles
J. Biomed. Opt. 14(5), 054030 (1 September 2009) doi:10.1117/1.3251051
TOPICS: Breast, Absorption, Collagen, Tissue optics, Tissues, Scattering, In vivo imaging, Diffuse optical spectroscopy, Diagnostics, Spectroscopy
Marta Larraona-Puy, Adrian Ghita, Alina Zoladek, William Perkins, Sandeep Varma, Iain Leach, Alexey Koloydenko, Hywel Williams, Ioan Notingher
J. Biomed. Opt. 14(5), 054031 (1 September 2009) doi:10.1117/1.3251053
TOPICS: Raman spectroscopy, Tissues, Skin, Tumors, Imaging spectroscopy, Tissue optics, Data modeling, Surgery, Skin cancer, Tumor growth modeling
Jaakko Virtanen, Tommi Noponen, Pekka Meriläinen
J. Biomed. Opt. 14(5), 054032 (1 September 2009) doi:10.1117/1.3253323
TOPICS: Independent component analysis, Principal component analysis, Near infrared spectroscopy, Hemodynamics, Natural surfaces, Sensors, Electronic filtering, Tissue optics, Signal detection, Tissues
Marie-Laure Anne, Caroline Le Lan, Valerie Monbet, Catherine Boussard-Plédel, Martine Ropert, Olivier Sire, Michel Pouchard, Christine Jard, Jacques Lucas, Jean-Luc Adam, Pierre Brissot, Bruno Bureau, Olivier Loréal
J. Biomed. Opt. 14(5), 054033 (1 September 2009) doi:10.1117/1.3253319
TOPICS: Iron, Spectroscopy, Mid-IR, Statistical analysis, Proteins, Profiling, Liver, Infrared spectroscopy, Mode conditioning cables, Genetics
J. Biomed. Opt. 14(5), 054034 (1 September 2009) doi:10.1117/1.3253320
TOPICS: Particles, Gold, Pulsed laser operation, Picosecond phenomena, Nanoparticles, Luminescence, Biomedical optics, Laser irradiation, Cell death, Proteins
Patrick Johnson, Ad Lagendijk
J. Biomed. Opt. 14(5), 054036 (1 September 2009) doi:10.1117/1.3253332
TOPICS: Systems modeling, Optical fibers, Diffusion, Foam, Statistical modeling, Anisotropic diffusion, Scattering, Anisotropy, Biomedical optics, Data modeling
Yankui Sun, Ming Lei
J. Biomed. Opt. 14(5), 054037 (1 September 2009) doi:10.1117/1.3251059
TOPICS: Optical coherence tomography, Image classification, Skin, Sun, Image analysis, Tissues, Principal component analysis, Image retrieval, Image resolution, Computer science
Shinji Umeyama, Toru Yamada
J. Biomed. Opt. 14(5), 054038 (1 September 2009) doi:10.1117/1.3253350
TOPICS: Near infrared spectroscopy, Signal to noise ratio, Optical testing, Sensors, Biological research, Biomedical optics, Signal attenuation, Solids, Human subjects, Absorption
Trent Ridder, Ben Ver Steeg, Bentley Laaksonen
J. Biomed. Opt. 14(5), 054039 (1 September 2009) doi:10.1117/1.3253353
TOPICS: Blood, Tissues, Tissue optics, Calibration, Capillaries, Spectroscopy, Near infrared spectroscopy, Bioalcohols, Spectroscopes, Absorption
J. Biomed. Opt. 14(5), 054040 (1 September 2009) doi:10.1117/1.3253382
TOPICS: Luminescence, Molecules, Oxygen, Surgery, Femtosecond phenomena, Laser therapeutics, Laser irradiation, Pulsed laser operation, Laser vision correction, Multiphoton microscopy
J. Biomed. Opt. 14(5), 054041 (1 September 2009) doi:10.1117/1.3253388
TOPICS: Second-harmonic generation, Luminescence, Signal generators, Ultrafast phenomena, Solids, Absorption, Gaussian pulse, Pulsed laser operation, Microscopy, Tissues
Valerie Duplan, Yannick Miron, Eric Frost, Michel Grandbois, Jan Dubowski
J. Biomed. Opt. 14(5), 054042 (1 September 2009) doi:10.1117/1.3251057
TOPICS: Gallium arsenide, Luminescence, Particles, Biosensors, Atomic force microscopy, Microscopy, Semiconductors, FT-IR spectroscopy, Molecules, Nanoparticles
J. Biomed. Opt. 14(5), 054043 (1 September 2009) doi:10.1117/1.3253386
TOPICS: Monte Carlo methods, Skin, Optical properties, Diffusion, Scattering, Photon transport, Absorption, Performance modeling, Tissue optics, Sensors
Oguz Baskurt, Mehmet Uyuklu, Max Hardeman, Herbert Meiselman
J. Biomed. Opt. 14(5), 054044 (1 September 2009) doi:10.1117/1.3251050
TOPICS: Lawrencium, Blood, Plasma, Amplifiers, Reflectivity, Artificial intelligence, Physiology, Medicine, Signal detection, Macromolecules
You-Chen Tao, Daniel Fried
J. Biomed. Opt. 14(5), 054045 (1 September 2009) doi:10.1117/1.3253390
TOPICS: Near infrared, Laser ablation, Imaging systems, Teeth, Dental caries, Gas lasers, Optical coherence tomography, Laser systems engineering, Carbon monoxide, Reflectivity
Hsiao-Chuan Wang, Simon Fleming, Yung-Chun Lee, Susan Law, Michael Swain, Jing Xue
J. Biomed. Opt. 14(5), 054046 (1 September 2009) doi:10.1117/1.3253396
TOPICS: Nondestructive evaluation, Wave propagation, Teeth, Dispersion, Ultrasonics, Optical fibers, Interferometers, Fiber lasers, Acoustics, In vivo imaging
Nikolaus Dragostinoff, René Werkmeister, Martin Gröschl, Leopold Schmetterer
J. Biomed. Opt. 14(5), 054047 (1 September 2009) doi:10.1117/1.3251049
TOPICS: Eye, Cornea, Interferometry, Tissue optics, Mirrors, Charge-coupled devices, Retina, Reflection, In vivo imaging, Distance measurement
Michal Tepper, Rotem Neeman, Yonat Milstein, Moshe Ben-David, Israel Gannot
J. Biomed. Opt. 14(5), 054048 (1 September 2009) doi:10.1117/1.3251036
TOPICS: Absorption, Tissues, Skin, Oxygen, Thermography, Temperature metrology, Tissue optics, Thermal modeling, Algorithm development, Biological research
J. Biomed. Opt. 14(5), 054049 (1 September 2009) doi:10.1117/1.3251044
TOPICS: Capillaries, Tissues, Blood, Diffusion, In vivo imaging, Blood vessels, Biomedical optics, Absorption, Tissue optics, Photoacoustic microscopy
J. Biomed. Opt. 14(5), 054050 (1 September 2009) doi:10.1117/1.3210766
TOPICS: Waveguides, Absorption, Absorbance, Glasses, Silicon, Infrared radiation, Biomedical optics, Hydrogen, Photodetectors, Optical activity
Karthik Vishwanath, Daniel Klein, Kevin Chang, Thies Schroeder, Mark Dewhirst, Nirmala Ramanujam
J. Biomed. Opt. 14(5), 054051 (1 September 2009) doi:10.1117/1.3251013
TOPICS: Tumors, Diffuse reflectance spectroscopy, Cancer, Chromium, Head, Neck, Optical spectroscopy, Oncology, Animal model studies, Tumor growth modeling
Errata
Xian Chen, Zhilie Tang, Yongheng He, Haifeng Liu, Yadong Wei, Yongbo Wu
J. Biomed. Opt. 14(5), 059801 (1 September 2009) doi:10.1117/1.3223339
TOPICS: Photoacoustic imaging, Acoustics, Adhesives, Information technology, Physics, Quantum information, Polymethylmethacrylate
J. Biomed. Opt. 14(5), 059802 (1 September 2009) doi:10.1117/1.3223351
TOPICS: Confocal microscopy, Reflectivity, Two photon excitation microscopy, Skull
Yuan Liu, Tzu-Lin Sun, Wen Lo, Chen-Yuan Dong, Hsiao-Ching Chen, Shu-Mei Yang, Ling-Ling Chiou, Guan-Tarn Huang, Hsuan-Shu Lee
J. Biomed. Opt. 14(5), 059803 (1 September 2009) doi:10.1117/1.3249658
TOPICS: Visualization, Multiphoton microscopy, Physics, Medicine, Internal medicine, Sun, Agriculture, Biotechnology
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