journal of biomedical optics
VOL. 17 · NO. 11 | November 2012
CONTENTS
JBO Letters
J. Biomed. Opt. 17(11), 110501 (9 October 2012) doi:10.1117/1.JBO.17.11.110501
TOPICS: Optical coherence tomography, Algorithm development, Biomedical optics, Iterative methods, Polarization, Wave plates, Fluctuations and noise, Jones matrices, Imaging systems, Ophthalmology
Hyungsik Lim, John Danias
J. Biomed. Opt. 17(11), 110502 (22 October 2012) doi:10.1117/1.JBO.17.11.110502
TOPICS: Second-harmonic generation, Nerve, Optical fibers, Axons, Retina, Visualization, Birefringence, Optical coherence tomography, Reflectivity, Optic nerve
Janggun Jo, Hongyu Zhang, Paul Cheney, Xinmai Yang
J. Biomed. Opt. 17(11), 110503 (22 October 2012) doi:10.1117/1.JBO.17.11.110503
TOPICS: Brain, Signal detection, Neuroimaging, Photoacoustic spectroscopy, Magnetic resonance imaging, Ultrasonography, Sensors, Photoacoustic imaging, Brain activation, Head
J. Biomed. Opt. 17(11), 110504 (24 October 2012) doi:10.1117/1.JBO.17.11.110504
TOPICS: Acoustics, Tomography, Scattering, Reconstruction algorithms, Sensors, Signal detection, Tissue optics, Wave propagation, Signal generators, Ultrasonics
J. Biomed. Opt. 17(11), 110505 (2 November 2012) doi:10.1117/1.JBO.17.11.110505
TOPICS: Tissues, Optical coherence tomography, Acoustics, Elastography, Coherence (optics), Tissue optics, Modulation, Arteries, 3D image processing, Ultrasonics
J. Biomed. Opt. 17(11), 110506 (2 November 2012) doi:10.1117/1.JBO.17.11.110506
TOPICS: Skull, Acquisition tracking and pointing, Brain, Photoacoustic tomography, Ultrasonography, Neuroimaging, Signal to noise ratio, Brain imaging, Light scattering, Photoacoustic spectroscopy
J. Biomed. Opt. 17(11), 110507 (9 November 2012) doi:10.1117/1.JBO.17.11.110507
TOPICS: Optical coherence tomography, Imaging systems, Magnetic resonance imaging, Computed tomography, 3D image processing, 3D modeling, In vivo imaging, Tissues, Range imaging, Bragg cells
Review Papers
Tom Lister, Philip Wright, Paul Chappell
J. Biomed. Opt. 17(11), 110901 (14 November 2012) doi:10.1117/1.JBO.17.11.110901
TOPICS: Skin, Monte Carlo methods, Scattering, Absorption, Optical simulations, Laser therapeutics, Diffusion, Reflectivity, Blood, Color prediction
Research Papers: General
J. Biomed. Opt. 17(11), 115001 (2 November 2012) doi:10.1117/1.JBO.17.11.115001
TOPICS: Scattering, Monte Carlo methods, Birefringence, Polarization, Backscatter, Mie scattering, Photon transport, Refractive index, Rayleigh scattering, Open source software
J. Biomed. Opt. 17(11), 115002 (2 November 2012) doi:10.1117/1.JBO.17.11.115002
TOPICS: Refractive index, Water, Absorption, Ultraviolet radiation, Blood, Biomedical optics, Glucose, Sodium, Visible radiation, Optical properties
Hao Shan, Yanmei Liang, Jingyi Wang, Yan Li
J. Biomed. Opt. 17(11), 115003 (8 November 2012) doi:10.1117/1.JBO.17.11.115003
TOPICS: Skin, Optical clearing, Optical coherence tomography, Liquids, Tissue optics, Tissues, Natural surfaces, In vitro testing, Biomedical optics, Interfaces
Andrea Monteiro, Maria A. Jardini, Viviana Giampaoli, Sarah Alves, Antonio Figueiredo Neto, Magnus Gidlund
J. Biomed. Opt. 17(11), 115004 (8 November 2012) doi:10.1117/1.JBO.17.11.115004
TOPICS: Plasma, Surface plasmons, Blood, Particles, Teeth, Inflammation, Statistical analysis, Biomedical optics, Magnesium, Pathogens
Jan Schlothauer, Steffen Hackbarth, Lutz Jäger, Kai Drobniewski, Hemantbhai Patel, Sergiu Gorun, Beate Röder
J. Biomed. Opt. 17(11), 115005 (8 November 2012) doi:10.1117/1.JBO.17.11.115005
TOPICS: Luminescence, Oxygen, Picosecond phenomena, Skin, Photodynamic therapy, Ear, Microscopy, In vivo imaging, Diffusion, Phosphorescence
Arindam Roy, Rajagopal Ramasubramaniam, Harshavardhan Gaonkar
J. Biomed. Opt. 17(11), 115006 (8 November 2012) doi:10.1117/1.JBO.17.11.115006
TOPICS: Reflectivity, Tissues, Scattering, Absorption, Radiative transfer, Laser scattering, Inverse optics, Transmittance, Tissue optics, Collimation
Filippo Piffaretti, Anna Maria Novello, Rajendran Senthil Kumar, Eddy Forte, Cédric Paulou, Patrycja Nowak-Sliwinska, Hubert van den Bergh, Georges Wagnières
J. Biomed. Opt. 17(11), 115007 (9 November 2012) doi:10.1117/1.JBO.17.11.115007
TOPICS: Photodynamic therapy, Oxygen, Content addressable memory, Luminescence, Picosecond phenomena, In vivo imaging, Tissues, Blood vessels, Tissue optics, Phosphorescence
Research Papers: Imaging
J. Biomed. Opt. 17(11), 116001 (1 November 2012) doi:10.1117/1.JBO.17.11.116001
TOPICS: Polarization, Tissues, Tumors, Luminescence, Microscopy, Cancer, Optical sensors, Sensors, Microscopes, Near infrared
Maria Cekanova, Md. Jashim Uddin, Alfred Legendre, Gina Galyon, Joseph Bartges, Amanda Callens, Tomas Martin-Jimenez, Lawrence Marnett
J. Biomed. Opt. 17(11), 116002 (1 November 2012) doi:10.1117/1.JBO.17.11.116002
TOPICS: Magnesium, Safety, Tumors, Plasma, Blood, Endoscopy, Cancer, Tissues, Optical imaging, Toxicity
Yang Sun, Hongtao Xie, Jing Liu, Matthew Lam, Abhijit Chaudhari, Feifei Zhou, Julien Bec, Diego Yankelevich, Allison Dobbie, Steven Tinling, Regina Gandour-Edwards, Wayne Monsky, Gregory Farwell, Laura Marcu
J. Biomed. Opt. 17(11), 116003 (1 November 2012) doi:10.1117/1.JBO.17.11.116003
TOPICS: Tissues, Luminescence, Tumors, Collagen, In vivo imaging, Time resolved spectroscopy, Ultrasonics, Ultrasonography, Tissue optics, Transducers
J. Biomed. Opt. 17(11), 116004 (1 November 2012) doi:10.1117/1.JBO.17.11.116004
TOPICS: Image segmentation, Optical coherence tomography, Tissues, Algorithm development, Image filtering, Detection and tracking algorithms, Toxicity, Image processing algorithms and systems, Natural surfaces, Biopsy
Seyed Hossein Rasta, Ayyakkannu Manivannan, Peter Sharp
J. Biomed. Opt. 17(11), 116005 (1 November 2012) doi:10.1117/1.JBO.17.11.116005
TOPICS: Oxygen, Retina, Eye, Scanning laser ophthalmoscopy, Confocal microscopy, Veins, Arteries, Imaging spectroscopy, Light scattering, Image processing
Huajiang Wei, Guoyong Wu, Zhouyi Guo, Hongqin Yang, Yonghong He, Shusen Xie, Xiao Guo
J. Biomed. Opt. 17(11), 116006 (1 November 2012) doi:10.1117/1.JBO.17.11.116006
TOPICS: Tissues, Glucose, Lung, Optical coherence tomography, Ultrasonography, Lung cancer, Diffusion, In vitro testing, Surface plasmons, Scattering
Jyh-Hong Lee, Ming-Rung Tsai, Chi-Kuang Sun, Bor-Luen Chiang
J. Biomed. Opt. 17(11), 116007 (1 November 2012) doi:10.1117/1.JBO.17.11.116007
TOPICS: Skin, Liquid crystals, In vivo imaging, Second-harmonic generation, Microscopy, Lymphatic system, FDA class II medical device development, Video, Molecules, Nonlinear optics
Fei Wang, Guohua Shi, Xiqi Li, Jing Lu, Zhihua Ding, Xinghuai Sun, Chunhui Jiang, Yudong Zhang
J. Biomed. Opt. 17(11), 116008 (1 November 2012) doi:10.1117/1.JBO.17.11.116008
TOPICS: Image segmentation, Optical coherence tomography, Eye, Biomedical optics, Adaptive optics, Light sources, Control systems, Statistical analysis, Visualization, Signal to noise ratio
Shahab Chitchian, Markus Mayer, Adam Boretsky, Frederik van Kuijk, Massoud Motamedi
J. Biomed. Opt. 17(11), 116009 (1 November 2012) doi:10.1117/1.JBO.17.11.116009
TOPICS: Denoising, Optical coherence tomography, Image enhancement, Wavelet transforms, Image quality, Signal to noise ratio, Wavelets, Eye, Speckle, Retina
Rahul Yadav, Ranjini Kottaiyan, Kamran Ahmad, Geun-Young Yoon
J. Biomed. Opt. 17(11), 116010 (1 November 2012) doi:10.1117/1.JBO.17.11.116010
TOPICS: Optical coherence tomography, Cornea, Light scattering, Monochromatic aberrations, Visualization, In vivo imaging, Interfaces, Eye, Optical resolution, Cones
J. Biomed. Opt. 17(11), 116011 (1 November 2012) doi:10.1117/1.JBO.17.11.116011
TOPICS: Second-harmonic generation, Collagen, Stem cells, Microscopy, Multiphoton microscopy, CARS tomography, Luminescence, In vitro testing, Signal processing, Bandpass filters
Aliz Kunstar, Jeroen Leijten, Stefan van Leuveren, Janneke Hilderink, Cornelis Otto, Clemens van Blitterswijk, Marcel Karperien, Aart van Apeldoorn
J. Biomed. Opt. 17(11), 116012 (1 November 2012) doi:10.1117/1.JBO.17.11.116012
TOPICS: Raman spectroscopy, Cartilage, Bone, Tissues, Principal component analysis, Imaging spectroscopy, Visualization, Collagen, Data analysis, Fetus
Jayakrupakar Nallala, Cyril Gobinet, Marie Danielle Diebold, Valerie Untereiner, Olivier Bouché, Michel Manfait, Ganesh Sockalingum, Olivier Piot
J. Biomed. Opt. 17(11), 116013 (1 November 2012) doi:10.1117/1.JBO.17.11.116013
TOPICS: Tissues, Infrared imaging, Tumors, Colon, Imaging spectroscopy, Infrared radiation, Principal component analysis, Proteins, Colorectal cancer, Cancer
Tyler Drake, Michael DeSoto, Jennifer Peters, Marcus Henderson, Bonnie Thiele, Tammy Sinclair Bishop, Amy Murtha, David Katz, Adam Wax
J. Biomed. Opt. 17(11), 116014 (1 November 2012) doi:10.1117/1.JBO.17.11.116014
TOPICS: Coating, In vivo imaging, Optical imaging, Tissues, Endoscopes, Natural surfaces, Luminescence, Imaging systems, Vagina, Interferometry
J. Biomed. Opt. 17(11), 116015 (1 November 2012) doi:10.1117/1.JBO.17.11.116015
TOPICS: In vivo imaging, Tissue optics, Tissues, Luminescence, Biopsy, Optical testing, Biomedical optics, Mode conditioning cables, Cell death, Optical imaging
J. Biomed. Opt. 17(11), 116016 (2 November 2012) doi:10.1117/1.JBO.17.11.116016
TOPICS: Ultrasonics, Transducers, Acoustics, In vivo imaging, Deconvolution, Photoacoustic microscopy, Imaging systems, Photoacoustic spectroscopy, Tissue optics, Image resolution
Samata Kakkad, Meiyappan Solaiyappan, Pedram Argani, Saraswati Sukumar, Lisa Jacobs, Dieter Leibfritz, Zaver Bhujwalla, Kristine Glunde
J. Biomed. Opt. 17(11), 116017 (1 November 2012) doi:10.1117/1.JBO.17.11.116017
TOPICS: Tumors, Lymphatic system, Breast, Second-harmonic generation, Breast cancer, Tissues, Biopsy, Collagen, Microscopy, Fourier transforms
J. Biomed. Opt. 17(11), 116018 (5 November 2012) doi:10.1117/1.JBO.17.11.116018
TOPICS: Blood circulation, Imaging systems, Tissues, Optic nerve, Tissue optics, Optical coherence tomography, 3D image processing, Capillaries, Head, Biomedical optics
J. Biomed. Opt. 17(11), 116019 (7 November 2012) doi:10.1117/1.JBO.17.11.116019
TOPICS: Acoustics, Transducers, Optical fibers, Ultrasonography, Photoacoustic tomography, Ultrasonics, Signal attenuation, Data acquisition, Acquisition tracking and pointing, Electronics
Fenghua Tian, F. Andrew Kozel, Amarnath Yennu, Paul Croarkin, Shawn McClintock, Kimberly Mapes, Mustafa Husain, Hanli Liu
J. Biomed. Opt. 17(11), 116020 (7 November 2012) doi:10.1117/1.JBO.17.11.116020
TOPICS: Brain, Reliability, Magnetism, Hemodynamics, Prefrontal cortex, Cortical activation, Neuroimaging, Spherical lenses, Head, Data analysis
J. Biomed. Opt. 17(11), 116021 (15 November 2012) doi:10.1117/1.JBO.17.11.116021
TOPICS: Tissues, Raman spectroscopy, Brain, Cancer, Tumors, Brain cancer, Spectroscopy, Biological research, Acoustics, Statistical analysis
Ronni Wessels, Daniel de Bruin, Dirk Faber, Hester van Boven, Andrew Vincent, Ton van Leeuwen, Marc van Beurden, Theo Ruers
J. Biomed. Opt. 17(11), 116022 (8 November 2012) doi:10.1117/1.JBO.17.11.116022
TOPICS: Optical coherence tomography, Tissues, Signal attenuation, Tissue optics, Biopsy, Skin, Cancer, Pathology, Statistical analysis, Light scattering
Viera Crosignani, Alexander Dvornikov, Jose Aguilar, Chiara Stringari, Robert Edwards, William Mantulin, Enrico Gratton
J. Biomed. Opt. 17(11), 116023 (8 November 2012) doi:10.1117/1.JBO.17.11.116023
TOPICS: Luminescence, Photons, In vivo imaging, Tissues, Tissue optics, Colon, Sensors, Stem cells, Intestine, Microscopes
J. Biomed. Opt. 17(11), 116024 (19 November 2012) doi:10.1117/1.JBO.17.11.116024
TOPICS: Absorption, In vivo imaging, Luminescence, Tissues, Nonlinear optics, Multiphoton microscopy, Femtosecond phenomena, Ultraviolet radiation, Photons, Harmonic generation
Kinshuk Mitra, James Melvin, Shufang Chang, Ronald Xu, Kyoungjin Park, Alper Yilmaz, Scott Melvin
J. Biomed. Opt. 17(11), 116025 (19 November 2012) doi:10.1117/1.JBO.17.11.116025
TOPICS: Luminescence, Tissues, Hyperspectral imaging, Image segmentation, Injuries, Gallbladder, Surgery, Image processing, Imaging systems, Tissue optics
Chia-Wei Sun, Yao-Sheng Hsieh, Yi-Ching Ho, Cho-Pei Jiang, Ching-Cheng Chuang, Shyh-Yuan Lee
J. Biomed. Opt. 17(11), 116026 (20 November 2012) doi:10.1117/1.JBO.17.11.116026
TOPICS: Teeth, Polarization, Optical testing, Mueller matrices, Polarimetry, Glasses, Transmittance, Biomedical optics, Interfaces, Scanning electron microscopy
Filippo Piffaretti, Jean-Pierre Ballini, Roberto Perotti, Matthieu Zellweger, Edoardo Vezzola, Michel Sickenberg, Georges Wagnières
J. Biomed. Opt. 17(11), 116027 (22 November 2012) doi:10.1117/1.JBO.17.11.116027
TOPICS: Reflectivity, Retina, Laser therapeutics, Eye, Laser tissue interaction, Tissues, Absorption, Optical filters, Infrared imaging, Pathology
Tim Holmes, Alessandro Invernizzi, Sean Larkin, Giovanni Staurenghi
J. Biomed. Opt. 17(11), 116028 (29 November 2012) doi:10.1117/1.JBO.17.11.116028
TOPICS: Optical coherence tomography, Indocyanine green, Angiography, Arteries, Eye, Blood, Tissues, Veins, Mathematical modeling, Capillaries
Research Papers: Sensing
Thomas Allsop, Ranjeet Bhamber, Glynn Lloyd, Martin Miller, Andrew Dixon, David Webb, Juan Ania-Castañon, Ian Bennion
J. Biomed. Opt. 17(11), 117001 (1 November 2012) doi:10.1117/1.JBO.17.11.117001
TOPICS: Sensors, Fiber Bragg gratings, Fiber optics, Sensing systems, Error analysis, Fiber optics sensors, Calibration, Silicon, Spine, Reconstruction algorithms
Pen-Li Lu, Shu-Shen Hsu, Meng-Li Tsai, Fu-Shan Jaw, An-Bang Wang, Chen-Tung Yen
J. Biomed. Opt. 17(11), 117002 (1 November 2012) doi:10.1117/1.JBO.17.11.117002
TOPICS: Gas lasers, Temperature metrology, Skin, Carbon monoxide, Pulsed laser operation, Infrared cameras, Data modeling, Finite element methods, Infrared lasers, Absorption
Alexander Caicedo, Gunnar Naulaers, Petra Lemmers, Frank van Bel, Martin Wolf, Sabine Van Huffel
J. Biomed. Opt. 17(11), 117003 (1 November 2012) doi:10.1117/1.JBO.17.11.117003
TOPICS: Near infrared spectroscopy, Signal processing, Blood pressure, Interference (communication), Lithium, Cerebral blood flow, Tissues, Tissue optics, Biological research, Biomedical optics
Natesh Parashurama, Thomas O'Sullivan, Adam de la Zerda, Pascale El Kallassi, Seongjae Cho, Hongguang Liu, Robert Teed, Hart Levy, Jarrett Rosenberg, Zhen Cheng, Ofer Levi, James Harris, Sanjiv Gambhir
J. Biomed. Opt. 17(11), 117004 (2 November 2012) doi:10.1117/1.JBO.17.11.117004
TOPICS: Sensors, Tumors, Signal detection, Tissues, Biosensors, Vertical cavity surface emitting lasers, Luminescence, In vivo imaging, CCD cameras, In vitro testing
J. Biomed. Opt. 17(11), 117005 (7 November 2012) doi:10.1117/1.JBO.17.11.117005
TOPICS: Blood, Plasma, Optical filters, Birefringence, Image filtering, Polarization, Crystals, Cancer, Fractal analysis, Biomedical optics
J. Biomed. Opt. 17(11), 117006 (8 November 2012) doi:10.1117/1.JBO.17.11.117006
TOPICS: Light scattering, Scattering, Particles, Mie scattering, Optical spheres, Microscopy, Microscopes, Spectral resolution, Refractive index, Laser scattering
Ralph W. C. G. Wijshoff, Massimo Mischi, Jeroen Veen, Alexander Van Der Lee, Ronald Aarts
J. Biomed. Opt. 17(11), 117007 (29 November 2012) doi:10.1117/1.JBO.17.11.117007
TOPICS: Sensors, Semiconductor lasers, Doppler effect, Motion measurement, Skin, Signal to noise ratio, Modulation, Tissue optics, Photodiodes, Speckle
Research Papers: Therapeutic
J. Biomed. Opt. 17(11), 118001 (15 November 2012) doi:10.1117/1.JBO.17.11.118001
TOPICS: Tissue optics, Uterus, Tissues, Laser coagulation, Optical components, Diffusers, In vivo imaging, Laser tissue interaction, Natural surfaces, Prototyping
Jose Archilla, Maria Moreira, Sueli Miyagi, Antonio Bombana, Norbert Gutknecht, Márcia Marques
J. Biomed. Opt. 17(11), 118002 (19 November 2012) doi:10.1117/1.JBO.17.11.118002
TOPICS: Nd:YAG lasers, Control systems, Teeth, Calcium, Bacteria, Tissues, Microorganisms, In vitro testing, Semiconductor lasers, Erbium lasers
Errata
David Abookasis, Elad Zafrir, Elimelech Nesher, Albert Pinhasov, Shmuel Sternklar, Marlon Mathews
J. Biomed. Opt. 17(11), 119801 (8 November 2012) doi:10.1117/1.JBO.17.11.119801
TOPICS: Reflectance spectroscopy, Mouse models, Biomedical optics, Electronics engineering, Molecular biology, Surgery
J. Biomed. Opt. 17(11), 119802 (28 November 2012) doi:10.1117/1.JBO.17.11.119802
TOPICS: Optical filters, Image filtering, Blood, Plasma, Biomedical optics
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