journal of biomedical optics
VOL. 18 · NO. 2 | February 2013
CONTENTS
Editorial
J. Biomed. Opt 18(2), 020101 (11 February 2013) doi:10.1117/1.JBO.18.2.020101
TOPICS: Biomedical optics, Microscopy, Spectroscopy, Cancer, In vivo imaging, Optical coherence tomography, Imaging spectroscopy, Photoacoustic imaging, Raman spectroscopy, Tumors
JBO Letters
J. Biomed. Opt 18(2), 020501 (15 January 2013) doi:10.1117/1.JBO.18.2.020501
TOPICS: Luminescence, Atrial fibrillation, Brain, Hyperspectral imaging, Image analysis, Signal to noise ratio, Neuroimaging, Biological research, Remote sensing, Nickel
Antonello Spinelli, Marco Ferdeghini, Carlo Cavedon, Emanuele Zivelonghi, Riccardo Calandrino, Alberto Fenzi, Andrea Sbarbati, Federico Boschi
J. Biomed. Opt 18(2), 020502 (18 January 2013) doi:10.1117/1.JBO.18.2.020502
TOPICS: Tissues, Electron multiplying charge coupled devices, Photons, Cerenkov radiation imaging, Breast, Chromium, Photography, Tissue optics, Charge-coupled devices, Radioisotopes
J. Biomed. Opt 18(2), 020503 (23 January 2013) doi:10.1117/1.JBO.18.2.020503
TOPICS: Luminescence, Animal model studies, Tomography, Fluorescence tomography, Image compression, Data acquisition, Spatial resolution, Tissues, 3D modeling, Structured light
J. Biomed. Opt 18(2), 020504 (31 January 2013) doi:10.1117/1.JBO.18.2.020504
TOPICS: Absorption, Photoacoustic spectroscopy, Photoacoustic microscopy, Ear, Luminescence, Microscopy, Chromophores, Tissue optics, Pulsed laser operation, Biomedical engineering
Nam Trung Huynh, Barrie Hayes-Gill, Fan Zhang, Stephen Morgan
J. Biomed. Opt 18(2), 020505 (5 February 2013) doi:10.1117/1.JBO.18.2.020505
TOPICS: Modulation, Tissue optics, Signal to noise ratio, Scattering, Light scattering, Ultrasonography, Bacteria, Luminescence, Spatial resolution, Light
Narendran Sudheendran, Shameena Bake, Rajesh Miranda, Kirill Larin
J. Biomed. Opt 18(2), 020506 (5 February 2013) doi:10.1117/1.JBO.18.2.020506
TOPICS: Optical coherence tomography, Brain, Neuroimaging, Bioalcohols, Ultrasonography, Image resolution, 3D image processing, HVAC controls, Imaging systems, Fetus
Ping Liu, Yanyue Huang, Zhouyi Guo, Jianping Wang, Zhengfei Zhuang, Songhao Liu
J. Biomed. Opt 18(2), 020507 (15 February 2013) doi:10.1117/1.JBO.18.2.020507
TOPICS: Diffusion, Skin, Raman spectroscopy, Tissues, Optical clearing, Confocal microscopy, Micro raman spectroscopy, Biomedical optics, Tissue optics, Light scattering
Research Papers: General
J. Biomed. Opt 18(2), 025001 (4 February 2013) doi:10.1117/1.JBO.18.2.025001
TOPICS: Optical tweezers, Blood, Solids, Laser beam propagation, Time metrology, Video, Microscopes, Beam propagation method, Image processing, Eye
Amanda Siegel, Nicole Hays, Richard Day
J. Biomed. Opt 18(2), 025002 (7 February 2013) doi:10.1117/1.JBO.18.2.025002
TOPICS: Proteins, Fluorescence resonance energy transfer, Diffusion, Fluorescence correlation spectroscopy, Luminescence, Fluorescence lifetime imaging, Microscopy, Confocal microscopy, Signal detection, Optical filters
J. Biomed. Opt 18(2), 025003 (12 February 2013) doi:10.1117/1.JBO.18.2.025003
TOPICS: Monochromatic aberrations, Eye, Point diffraction interferometers, Zernike polynomials, Optical fibers, Visualization, Spherical lenses, Wavefronts, Error analysis, Interferometry
J. Biomed. Opt 18(2), 025004 (12 February 2013) doi:10.1117/1.JBO.18.2.025004
TOPICS: Tissue optics, Phase conjugation, Scattering, Channel projecting optics, Modulation, Adaptive optics, Tissues, Finite-difference time-domain method, Wavefronts, Refraction
Marcello Costantini, Assunta Di Vacri, Antonio Maria Chiarelli, Francesca Ferri, Gian Romani, Arcangelo Merla
J. Biomed. Opt 18(2), 025005 (15 February 2013) doi:10.1117/1.JBO.18.2.025005
TOPICS: Near infrared spectroscopy, Brain, Sensors, Cognition, Hemodynamics, Sensorimotor cortex, Functional magnetic resonance imaging, Visualization, Neuroscience, Social neuroscience
J. Biomed. Opt 18(2), 025006 (20 February 2013) doi:10.1117/1.JBO.18.2.025006
TOPICS: Tissue optics, Absorption, Solids, Particle filters, Biomedical optics, Multilayers, Glasses, Optical properties, Epoxies, Optics manufacturing
Research Papers: Imaging
J. Biomed. Opt 18(2), 026001 (1 February 2013) doi:10.1117/1.JBO.18.2.026001
TOPICS: Imaging systems, In vivo imaging, Data acquisition, Fiber lasers, Image processing, Real time imaging, Photoacoustic spectroscopy, Mirrors, Transducers, Ear
J. Biomed. Opt 18(2), 026002 (1 February 2013) doi:10.1117/1.JBO.18.2.026002
TOPICS: Optical coherence tomography, Video acceleration, Video, Graphics processing units, 3D image processing, Data processing, Video processing, Image processing, Volume rendering, Interferometry
J. Biomed. Opt 18(2), 026003 (1 February 2013) doi:10.1117/1.JBO.18.2.026003
TOPICS: Photoacoustic spectroscopy, Temperature metrology, Thermometry, Calibration, Pulsed laser operation, Particles, Acoustics, Image resolution, Cancer, Imaging systems
Shou-Yuan Guo, Fang-Tsu Liao, Ming-Tsan Su, Cheng-Yi Chang, Hong-Ren Su, Jyun-Cin Huang, Wen-Chuan Kuo
J. Biomed. Opt 18(2), 026004 (1 February 2013) doi:10.1117/1.JBO.18.2.026004
TOPICS: Image segmentation, Heart, Optical coherence tomography, Evolutionary algorithms, Image processing algorithms and systems, Coherence imaging, Algorithms, Electronic design automation, Artificial intelligence, Optical imaging
Wenhua Liu, Evelyn Ralston, Nina Raben
J. Biomed. Opt 18(2), 026005 (1 February 2013) doi:10.1117/1.JBO.18.2.026005
TOPICS: Optical fibers, Mars, Second-harmonic generation, Biopsy, Zoom lenses, Fourier transforms, Image processing, Harmonic generation, Visualization, Sensors
J. Biomed. Opt 18(2), 026006 (1 February 2013) doi:10.1117/1.JBO.18.2.026006
TOPICS: Image segmentation, Digital holography, Blood, Holography, Image processing algorithms and systems, Microscopy, Binary data, Holograms, Performance modeling, 3D image processing
Nadhi Thekkek, Mark Pierce, Michelle Lee, Alexandros Polydorides, Raja Flores, Sharmila Anandasabapathy, Rebecca Richards-Kortum
J. Biomed. Opt 18(2), 026007 (1 February 2013) doi:10.1117/1.JBO.18.2.026007
TOPICS: In vivo imaging, Endoscopy, Luminescence, Endoscopes, Video, Imaging systems, Image filtering, Video surveillance, Visualization, Optical filters
J. Biomed. Opt 18(2), 026008 (1 February 2013) doi:10.1117/1.JBO.18.2.026008
TOPICS: Optical coherence tomography, Polarization, Birefringence, Imaging systems, Data acquisition, Image segmentation, Modulation, Mode locking, Retinal scanning, 3D acquisition
J. Biomed. Opt 18(2), 026009 (5 February 2013) doi:10.1117/1.JBO.18.2.026009
TOPICS: Reconstruction algorithms, Imaging systems, Transducers, Photoacoustic spectroscopy, Image restoration, Image quality, Signal to noise ratio, Image filtering, 3D modeling, Lanthanum
Shuu Kiyotoki, Jun Nishikawa, Takeshi Okamoto, Kouichi Hamabe, Mari Saito, Atsushi Goto, Yusuke Fujita, Yoshihiko Hamamoto, Yusuke Takeuchi, Shin Satori, Isao Sakaida
J. Biomed. Opt 18(2), 026010 (6 February 2013) doi:10.1117/1.JBO.18.2.026010
TOPICS: Tumors, Cancer, Diagnostics, Image processing, Hyperspectral imaging, Image enhancement, Algorithm development, Reflectivity, Imaging spectroscopy, Endoscopy
J. Biomed. Opt 18(2), 026011 (6 February 2013) doi:10.1117/1.JBO.18.2.026011
TOPICS: Blood vessels, Transducers, Acoustics, Tissues, In vivo imaging, Tissue optics, Signal detection, Imaging systems, Absorption, 3D image processing
J. Biomed. Opt 18(2), 026012 (6 February 2013) doi:10.1117/1.JBO.18.2.026012
TOPICS: Skin, In vivo imaging, Microscopy, Third-harmonic generation, Biopsy, Tissue optics, Nanoparticles, Luminescence, Second-harmonic generation, Multiphoton microscopy
Xibo Ma, Kexin Deng, Zhenwen Xue, Xueyan Liu, Shouping Zhu, Chenghu Qin, Xin Yang, Jie Tian
J. Biomed. Opt 18(2), 026013 (6 February 2013) doi:10.1117/1.JBO.18.2.026013
TOPICS: Image registration, Bioluminescence, 3D image processing, Chemical elements, Microcomputed tomography, Bone, Imaging systems, Finite element methods, 3D acquisition, Reconstruction algorithms
J. Biomed. Opt 18(2), 026014 (6 February 2013) doi:10.1117/1.JBO.18.2.026014
TOPICS: Blood, Optical coherence tomography, Refractive index, Optical clearing, Scattering, Veins, Tissues, Transmittance, Light scattering, Signal attenuation
J. Biomed. Opt 18(2), 026015 (7 February 2013) doi:10.1117/1.JBO.18.2.026015
TOPICS: LCDs, Microscopy, Wavefronts, Microscopes, Image sensors, Sensors, Biomedical optics, Diffusers, Spatial filters, Prototyping
Han Ban, David Busch, Saurav Pathak, Frank Moscatelli, Manabu Machida, John Schotland, Vadim Markel, Arjun Yodh
J. Biomed. Opt 18(2), 026016 (7 February 2013) doi:10.1117/1.JBO.18.2.026016
TOPICS: Chest, Reconstruction algorithms, Image restoration, Diffuse optical tomography, Sensors, Absorption, Image quality, Charge-coupled devices, Scattering, In vivo imaging
J. Biomed. Opt 18(2), 026017 (7 February 2013) doi:10.1117/1.JBO.18.2.026017
TOPICS: Retina, Reflectivity, Toxicity, Sodium, Optical coherence tomography, Statistical analysis, 3D image processing, In vivo imaging, Image segmentation, Animal model studies
Ti Zhang, Huizhong Cui, Chia-Yi Fang, Long-Jyun Su, Shenqiang Ren, Huan-Cheng Chang, Xinmai Yang, M. Laird Forrest
J. Biomed. Opt 18(2), 026018 (12 February 2013) doi:10.1117/1.JBO.18.2.026018
TOPICS: Tissues, Absorption, Photoacoustic spectroscopy, Tissue optics, Particles, Absorbance, Biomedical optics, Photoacoustic imaging, Gold, Single walled carbon nanotubes
Chandra Sekhar Prasanth, Joseph Betsy, Jayaraj Jayanthi, Unni Nisha, Janam Prasantila, Narayanan Subhash
J. Biomed. Opt 18(2), 026019 (12 February 2013) doi:10.1117/1.JBO.18.2.026019
TOPICS: Inflammation, Tissues, Diffuse reflectance spectroscopy, Diagnostics, In vivo imaging, Cameras, Bone, Imaging spectroscopy, Imaging systems, Absorption
J. Biomed. Opt 18(2), 026020 (12 February 2013) doi:10.1117/1.JBO.18.2.026020
TOPICS: Esophagus, Luminescence, Reflectivity, Tissue optics, Tissues, Endoscopes, Latex, Endoscopy, Molecular imaging, Natural surfaces
Neil Kalwani, Cheng Ai Ong, Andrew Lysaght, Simon Haward, Gareth McKinley, Konstantina Stankovic
J. Biomed. Opt 18(2), 026021 (13 February 2013) doi:10.1117/1.JBO.18.2.026021
TOPICS: Collagen, Birefringence, Microscopy, Polarized microscopy, Ear, Tissues, Microscopes, Optical coherence tomography, Optical properties, In vivo imaging
Yuri Dancik, Amandine Favre, Chong Jin Loy, Andrei Zvyagin, Michael Roberts
J. Biomed. Opt 18(2), 026022 (14 February 2013) doi:10.1117/1.JBO.18.2.026022
TOPICS: Skin, Luminescence, Fluorescence lifetime imaging, Picosecond phenomena, In vivo imaging, Multiphoton tomography, Tissues, Photons, Biopsy, Tissue optics
J. Biomed. Opt 18(2), 026023 (19 February 2013) doi:10.1117/1.JBO.18.2.026023
TOPICS: Calibration, Sensors, Tissue optics, Data analysis, Tissues, Data modeling, Absorption, Imaging systems, Scattering, Photons
Sanam Mustafa, John Hannagan, Paul Rigby, Kevin Pfleger, Ben Corry
J. Biomed. Opt 18(2), 026024 (19 February 2013) doi:10.1117/1.JBO.18.2.026024
TOPICS: Fluorescence resonance energy transfer, Microscopes, Sensors, Resonance energy transfer, Energy efficiency, Luminescence, Venus, Fluorometers, Microscopy, Voltage controlled voltage source
Research Papers: Sensing
Kyoung Won Jang, Takahiro Yagi, Cheol Ho Pyeon, Wook Jae Yoo, Sang Hun Shin, Chiyoung Jeong, Byung Jun Min, Dongho Shin, Tsuyoshi Misawa, Bongsoo Lee
J. Biomed. Opt 18(2), 027001 (1 February 2013) doi:10.1117/1.JBO.18.2.027001
TOPICS: Cerenkov radiation imaging, Polymer optical fibers, Electrons, Particles, Ionization, Optical fibers, Radiotherapy, Polymethylmethacrylate, Scintillators, Spectroscopy
Luca Ferrari, Luigi Rovati, Paola Fabbri, Francesco Pilati
J. Biomed. Opt 18(2), 027002 (1 February 2013) doi:10.1117/1.JBO.18.2.027002
TOPICS: Blood, Sensors, Polymers, Luminescence, Calibration, In vitro testing, Head, Carbon monoxide, Light emitting diodes, Chemical elements
Yongzeng Li, Jianji Pan, Guannan Chen, Chao Li, Shaojun Lin, Yonghong Shao, Shangyuan Feng, Zufang Huang, Shusen Xie, Haishan Zeng, Rong Chen
J. Biomed. Opt 18(2), 027003 (1 February 2013) doi:10.1117/1.JBO.18.2.027003
TOPICS: Tissues, Raman spectroscopy, Diagnostics, Cancer, Micro raman spectroscopy, Principal component analysis, Proteins, Tumors, Lithium, Statistical analysis
J. Biomed. Opt 18(2), 027004 (1 February 2013) doi:10.1117/1.JBO.18.2.027004
TOPICS: Arteries, Biomedical optics, Transducers, Ultrasonography, Reflectivity, Sensors, Standards development, Skin, Linear filtering, Photoplethysmography
Paolo Giacometti, Solomon Diamond
J. Biomed. Opt 18(2), 027005 (1 February 2013) doi:10.1117/1.JBO.18.2.027005
TOPICS: Head, Electrodes, Electroencephalography, Near infrared spectroscopy, Sensors, Brain, 3D modeling, Hemodynamics, Diamond, Computer aided design
Nitin Yadav, Sanjiv Bhatia, John Ragheb, Rupal Mehta, Prasanna Jayakar, William Yong, Wei-Chiang Lin
J. Biomed. Opt 18(2), 027006 (5 February 2013) doi:10.1117/1.JBO.18.2.027006
TOPICS: Brain, Diffuse reflectance spectroscopy, Luminescence, Epilepsy, Tissue optics, In vivo imaging, Surgery, Tissues, Fluorescence spectroscopy, Hemodynamics
J. Biomed. Opt 18(2), 027007 (6 February 2013) doi:10.1117/1.JBO.18.2.027007
TOPICS: Blood, Near infrared spectroscopy, Oxygen, Cyanide, Tissues, Spectroscopy, Brain, Mode conditioning cables, Optical properties, Time resolved spectroscopy
Shao-Xin Li, Qiu-Yao Zeng, Lin-Fang Li, Yan-Jiao Zhang, Ming-Ming Wan, Zhi-Ming Liu, Hong-Lian Xiong, Zhou-Yi Guo, Song-Hao Liu
J. Biomed. Opt 18(2), 027008 (6 February 2013) doi:10.1117/1.JBO.18.2.027008
TOPICS: Surface enhanced Raman spectroscopy, Diagnostics, Cancer, Raman spectroscopy, Principal component analysis, Silver, Tissues, Algorithm development, Blood, Data modeling
Manfred Muller, Benno Hendriks
J. Biomed. Opt 18(2), 027009 (11 February 2013) doi:10.1117/1.JBO.18.2.027009
TOPICS: Luminescence, Tissues, Absorption, Monte Carlo methods, Scattering, Distance measurement, Diffuse reflectance spectroscopy, Photon transport, Diffusion, Tissue optics
J. Biomed. Opt 18(2), 027010 (20 February 2013) doi:10.1117/1.JBO.18.2.027010
TOPICS: Raman spectroscopy, Data modeling, Blood, Statistical modeling, Surgery, Calibration, Luminescence, Optical filters, Biological research, Heart
Sandra Tamosaityte, Vaiva Hendrixson, Arunas Zelvys, Ramunas Tyla, Zita Kucinskiene, Feliksas Jankevicius, Milda Pucetaite, Valerija Jablonskiene, Valdas Sablinskas
J. Biomed. Opt 18(2), 027011 (21 February 2013) doi:10.1117/1.JBO.18.2.027011
TOPICS: Crystals, Renal calculi, Infrared radiation, Spectroscopy, FT-IR spectroscopy, Infrared imaging, Chemical analysis, Calcium, Absorbance, Absorption
J. Biomed. Opt 18(2), 027012 (1 March 2013) doi:10.1117/1.JBO.18.2.027012
TOPICS: Optical properties, Double positive medium, Monte Carlo methods, Tissue optics, Fiber optics, Detection and tracking algorithms, Spectroscopy, Reflectivity, Tissues, Photons
Research Papers: Therapeutic
J. Biomed. Opt 18(2), 028001 (1 February 2013) doi:10.1117/1.JBO.18.2.028001
TOPICS: Holmium, Pulsed laser operation, Fiber optics, Fiber lasers, YAG lasers, Water, Cavitation, Laser energy, Laser ablation, Surgery
Errata
J. Biomed. Opt 18(2), 029801 (15 February 2013) doi:10.1117/1.JBO.18.2.029801
TOPICS: Blood, Optical clearing, Optical coherence tomography, Biomedical optics, Tissue optics, Physics, Microcirculation imaging, Medicine, Photonics, Mechanics
Yuri Dancik, Amandine Favre, Chong Jin Loy, Andrei Zvyagin, Michael Roberts
J. Biomed. Opt 18(2), 029802 (26 February 2013) doi:10.1117/1.JBO.18.2.029802
TOPICS: Multiphoton tomography, Fluorescence lifetime imaging, Skin, In vivo imaging, Biomedical optics, Medical research, Luminescence, Medicine, Pharmacy
Book Reviews
J. Biomed. Opt 18(2), 029901 (14 February 2013) doi:10.1117/1.JBO.18.2.029901
TOPICS: Microscopy, Electronic imaging, Microscopes, Medicine, Java, Visualization, Image processing, Magnetism, Mathematics, Light
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