Analysis of tumour cells is essential for morphological characterisation which is useful for disease prognosis and survival prediction. Visual assessment of tumour cell morphology by expert human observers for prognostic purposes is subjective and potentially a tedious process. In this paper, we propose an automated and objective method for tumour cell analysis in whole slide images (WSI) of lung adenocarcinoma. Tumour cells are first extracted at higher magnification and then morphological, texture and spatial distribution features are computed for each cell. We investigated the biological impact of the nuclear features in the context of tumour grading. Results show that some of these features are correlated with tumour grade. We examine some of these features on the WSI where these features shows different distribution depends on the tumour grade.
The first step prior to most analyses on most histopathology images is the detection of area of interest. In this work, we present a superpixel-based approach for glandular structure detection in colon histology images. An image is first segmented into superpixels with the constraint on the presence of glandular boundaries. Texture and color information is then extracted from each superpixel to calculate the probability of that superpixel belonging to glandular regions, resulting in a glandular probability map. In addition, we present a novel texture descriptor derived from a region covariance matrix of scattering coefficients. Our approach shows encouraging results for the detection of glandular structures in colon tissue samples.
The recent development of multivariate imaging techniques, such as the Toponome Imaging System (TIS), has facilitated the analysis of multiple co-localisation of proteins. This could hold the key to understanding complex phenomena such as protein-protein interaction in cancer. In this paper, we propose a Bayesian framework for cell level network analysis allowing the identification of several protein pairs having significantly higher co-expression levels in cancerous tissue samples when compared to normal colon tissue. It involves segmenting the DAPI-labeled image into cells and determining the cell phenotypes according to their protein-protein dependence profile. The cells are phenotyped using Gaussian Bayesian hierarchical clustering (GBHC) after feature selection is performed. The phenotypes are then analysed using Difference in Sums of Weighted cO-dependence Profiles (DiSWOP), which detects differences in the co-expression patterns of protein pairs. We demonstrate that the pairs highlighted by the proposed framework have high concordance with recent results using a different phenotyping method. This demonstrates that the results are independent of the clustering method used. In addition, the highlighted protein pairs are further analysed via protein interaction pathway databases and by considering the localization of high protein-protein dependence within individual samples. This suggests that the proposed approach could identify potentially functional protein complexes active in cancer progression and cell differentiation.