Knowledge of structure rules of the atomic nucleus and the properties of vortex electromagnetic field allow us to create relatively precisely the structures of individual atoms and molecules. Properties of atoms are largely described by the structure of their electron shells. However, the standard model of atoms does not allow define this structure exactly. New theory VFRT (vortex-fractal-ring-theory) can solve this lack. Theory VFRT uses fractal ring structure of the electron, the proton and the neutron, and can describe the inner structure of atomic nuclei. Fractal descriptions of Nature are very promising. The atomic nucleus can be built from the ring protons and neutrons. This new theory assumes that the arrangement of electron shells arises from the structure of the atomic nucleus. Electrons are not in orbit around the atomic nucleus, but each electron levitates with the corresponding proton of the nucleus. The levitation bond between the electron and the proton is formed by an electromagnetic vortex structure. Theory VFRT expands understanding of nature through a new perspective on the evolution of lifeless nature using a vortex, fractal and ring substructures with self-organization, from quarks, electrons, protons and neutrons, atoms, molecules, to the structure of complex organic compounds.