The theories of optical instrument are the Interdisciplinary of Optical Engineering and Instrument Science and Technology. The undergraduates should study the knowledge about the optics, precision machine and electronics. The courses such as Theory of Machine, Engineering Optics, even include some courses about Accuracy Analysis of Instrument are offered in the college. There are a lot of correlatives among these courses. This paper focuses on the structural logic of these courses. The order of these courses is researched, The aims of all the courses are clear completely to avoid the same topics to be taught twice in different courses. Therefore, the undergraduates would get the main line of the knowledge, and the professors would teach efficiently.