Open Access
31 January 2023 Single patch super-resolution of histopathology whole slide images: a comparative study
Mehdi Afshari, Saba Yasir, Gary L. Keeney, Rafael E. Jimenez, Joaquin J. Garcia, Hamid R. Tizhoosh
Author Affiliations +
Abstract

Purpose

The latest generation of scanners can digitize histopathology glass slides for computerized image analysis. These images contain valuable information for diagnostic and prognostic purposes. Consequently, the availability of high digital magnifications like 20 × and 40 × is commonly expected in scanning the slides. Thus, the image acquisition typically generates gigapixel high-resolution images, times as large as 100,000 × 100,000 pixels. Naturally, the storage and processing of such huge files may be subject to severe computational bottlenecks. As a result, the need for techniques that can operate on lower magnification levels but produce results on par with outcomes for high magnification levels is becoming urgent.

Approach

Over the past decade, the digital solution of enhancing images resolution has been addressed by the concept of super resolution (SR). In addition, deep learning has offered state-of-the-art results for increasing the image resolution after acquisition. In this study, multiple deep learning networks designed for image SR are trained and assessed for the histopathology domain.

Results

We report quantitative and qualitative comparisons of the results using publicly available cancer images to shed light on the benefits and challenges of deep learning for extrapolating image resolution in histopathology. Three pathologists evaluated the results to assess the quality and diagnostic value of generated SR images.

Conclusions

Pixel-level information, including structures and textures in histopathology images, are learnable by deep networks; hence improving the resolution quantity of scanned slides is possible by training appropriate networks. Different SR networks may perform best for various cancer sites and subtypes.

CC BY: © The Authors. Published by SPIE under a Creative Commons Attribution 4.0 International License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.
Mehdi Afshari, Saba Yasir, Gary L. Keeney, Rafael E. Jimenez, Joaquin J. Garcia, and Hamid R. Tizhoosh "Single patch super-resolution of histopathology whole slide images: a comparative study," Journal of Medical Imaging 10(1), 017501 (31 January 2023). https://doi.org/10.1117/1.JMI.10.1.017501
Received: 1 January 2022; Accepted: 9 January 2023; Published: 31 January 2023
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KEYWORDS
Histopathology

Lawrencium

Education and training

Super resolution

Diagnostics

Pathology

Deep learning

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